ISOVIS
/
t-viSNE
10
0
Fork 0
Code Issues Pull Requests Releases 2 Wiki Activity

fixed cost limiter

Browse Source 
Former-commit-id: b6c9b0ff1a
master
Angelos Chatzimparmpas 7 years ago
parent a23e8791f3
commit da0f5004ea
2 changed files with 72 additions and 69 deletions
Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL
Show Stats Download Patch File Download Diff File
  1. 8
      index.html
  2. 131
      js/tsne_vis.js

8
index.html
Unescape View File

@ -126,8 +126,8 @@
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default right-side-cor">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">Correl. Schema Investigation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Mininum Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.5</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.5", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
<h2 class="panel-title" style="display:inline-block">Correl. Schema Investigation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Mininum Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.0</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.0", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
</div>
</div>
<div class="panel-body">
@ -261,8 +261,8 @@
<div class="col-md-3" id="extra-information" style="width: 24.6vw">
<div class="panel panel-default right-side-hist">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Minimum Cost Boundary: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0" max="1" value="1", step="1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Cost Limiter: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0.1" max="1" value="1", step="0.1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
</div>
</div>
<div class="panel-body">

131
js/tsne_vis.js
Unescape View File

@ -2287,7 +2287,8 @@ if (points.length) { // If points exist (at least 1 point)
var findNearestTable = [];
var howManyPoints = 0;
for (let m=0; m<points.length; m++){
if (points[m].selected == true){
if (points[m].id == 257){
//if (points[m].selected == true){
howManyPoints = howManyPoints + 1;
selectedPoints.push(points[m]); // Add the selected points in to a new variable
}
@ -2304,8 +2305,8 @@ if (points.length) { // If points exist (at least 1 point)
var vw = viewport[0] * 0.5;
var vh = viewport[1] * 0.042;
var maxKNN = Math.round(document.getElementById("param-perplexity-value").value*1.25); // Specify the amount of k neighborhoods that we are going to calculate. According to "perplexity."
//var maxKNN = 3;
//var maxKNN = Math.round(document.getElementById("param-perplexity-value").value*1.25); // Specify the amount of k neighborhoods that we are going to calculate. According to "perplexity."
var maxKNN = 1;
selectedPoints.sort(function(a, b) { // Sort the points according to ID.
return parseFloat(a.id) - parseFloat(b.id);
});
@ -2355,6 +2356,7 @@ if (points.length) { // If points exist (at least 1 point)
}
return 0;
});
indexOrder2d[i] = indices2d[i].map(function(value) { return value[0]; });
}
indexOrderSliced[i] = indexOrder[i].slice(0,k);
@ -2698,6 +2700,8 @@ if (points.length) { // If points exist (at least 1 point)
var max = (d3.max(points,function(d){ return d.beta; }));
var min = (d3.min(points,function(d){ return d.beta; }));
// colors
var colorbrewer = ["#ffffcc","#ffeda0","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#bd0026","#800026"];
var calcStep = (max)/8;
@ -2705,13 +2709,25 @@ if (points.length) { // If points exist (at least 1 point)
.domain(d3.range(0, max+calcStep, calcStep))
.range(colorbrewer);
var costLimiter = document.getElementById("param-costlim").value;
var maxSize1 = (d3.max(points,function(d){ return d.cost; }));
var minSize1 = (d3.min(points,function(d){ return d.cost; }));
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var minSize1 = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (minSize1 > points[i].cost){
minSize1 = points[i].cost;
}
}
var rscale1 = d3.scaleLinear()
.domain([minSize1, maxSize1])
.range([5,parseInt(12-(1-document.getElementById("param-costlim").value)*7)]);
var calcStepSize1 = (maxSize1-minSize1);
var limitdist = document.getElementById("param-lim-value").value;
@ -2784,8 +2800,20 @@ if (points.length) { // If points exist (at least 1 point)
}
} else { // If we have cost into color then calculate the color scales
var costLimiter = document.getElementById("param-costlim").value;
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var min = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (min > points[i].cost){
min = points[i].cost;
}
}
var max = (d3.max(points,function(d){ return d.cost; }));
var min = (d3.min(points,function(d){ return d.cost; }));
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var minSize2 = (d3.min(points,function(d){ return d.beta; }));
@ -2796,37 +2824,12 @@ if (points.length) { // If points exist (at least 1 point)
d3.selectAll("#legend1 > *").remove();
if (document.getElementById("param-costlim").value*max < max){
var ordinal = d3.scaleOrdinal()
.domain(["0.00000"])
.range(["rgb(217,240,163)"]);
var svg = d3.select("#legend1");
svg.append("g")
.attr("class", "legendOrdinal")
.attr("transform", "translate(10,15)");
var legendOrdinal = d3.legendColor()
.title("KLD(P||Q)")
.cells(1)
.scale(ordinal);
svg.select(".legendOrdinal")
.call(legendOrdinal);
} else{
var colorbrewer = ['#d9f0a3','#addd8e','#78c679','#41ab5d','#238443','#006837','#004529'];
var calcStep = (max-min)/6;
var calcStep = ((max-min)/6);
var colorScale = d3.scaleLinear()
.domain(d3.range(min, max+calcStep, calcStep))
.range(colorbrewer);
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var labels_cost = [];
var abbr_labels_cost = [];
labels_cost = d3.range(min, max+calcStep, calcStep);
@ -2851,8 +2854,6 @@ if (points.length) { // If points exist (at least 1 point)
svg.select(".legendLinear")
.call(legend);
}
var calcStepSize2 = parseInt(maxSize2/2);
var limitdist = document.getElementById("param-lim-value").value;
@ -2995,15 +2996,18 @@ if (points.length) { // If points exist (at least 1 point)
var color = new THREE.Color(colorScale(points[i].beta));
}
else{
if (document.getElementById("param-costlim").value*max < max) {
var color = new THREE.Color("rgb(217,240,163)");
}
else {
var color = new THREE.Color(colorScale(points[i].cost));
}
if (points[i].cost < min){
var color = new THREE.Color("rgb(240,240,240)");
} else{
var color = new THREE.Color(colorScale(points[i].cost));
}
}
if (ColSizeSelector == "color") {
let sizePoint = rscale1(points[i].cost);
if (points[i].cost < minSize1){
var sizePoint = 1;
} else{
var sizePoint = rscale1(points[i].cost);
}
factorPlusSize = limitdist * sizePoint;
pointsGeometry.colors.push(color);
pointsMaterial = new THREE.PointsMaterial({
@ -3083,32 +3087,24 @@ if (points.length) { // If points exist (at least 1 point)
break;
} else {
var max = (d3.max(points,function(d){ return d.cost; }));
var min = (d3.min(points,function(d){ return d.cost; }));
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var minSize2 = (d3.min(points,function(d){ return d.beta; }));
var costLimiter = document.getElementById("param-costlim").value;
d3.selectAll("#legend1 > *").remove();
if (document.getElementById("param-costlim").value*max < max){
var ordinal = d3.scaleOrdinal()
.domain(["0.00000"])
.range(["rgb(217,240,163)"]);
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var min = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (min > points[i].cost){
min = points[i].cost;
}
}
var svg = d3.select("#legend1");
d3.select("#legend1");
svg.append("g")
.attr("class", "legendOrdinal")
.attr("transform", "translate(10,15)");
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var legendOrdinal = d3.legendColor()
.title("KLD(P||Q)")
.scale(ordinal);
d3.selectAll("#legend1 > *").remove();
svg.select(".legendOrdinal")
.call(legendOrdinal);
} else{
var colorbrewer = ["#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#006837","#004529"];
var calcStep = (max-min)/6;
var colorScale = d3.scaleLinear()
@ -3141,7 +3137,6 @@ if (points.length) { // If points exist (at least 1 point)
svg.select(".legendLinear")
.call(legend);
}
}
}
}
@ -3331,7 +3326,15 @@ view.on("mouseleave", () => {
tooltip_state[Category] = "Point ID: " + datum.id;
tooltip_state.color = datum.id;
} else{
tooltip_state[Category] = datum[Category] + " (Point ID: " + datum.id + ")";
if (format[0] == "diabetes"){
if (datum[Category] == "1"){
tooltip_state[Category] = "Positive" + "(Point ID: " + datum.id + ")";
} else{
tooltip_state[Category] = "Negative" + " (Point ID: " + datum.id + ")";
}
} else{
tooltip_state[Category] = datum[Category] + " (Point ID: " + datum.id + ")";
}
tooltip_state.color = datum[Category];
}
tooltip_dimensions = [];

Write Preview
Loading…
Cancel
Save