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fixed cost limiter

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Former-commit-id: b6c9b0ff1a
master
Angelos Chatzimparmpas 5 years ago
parent a23e8791f3
commit da0f5004ea
2 changed files with 72 additions and 69 deletions
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  1. 8
      index.html
  2. 133
      js/tsne_vis.js

8
index.html
Unescape View File

@ -126,8 +126,8 @@
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default right-side-cor">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">Correl. Schema Investigation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Mininum Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.5</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.5", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
<h2 class="panel-title" style="display:inline-block">Correl. Schema Investigation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Mininum Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.0</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.0", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
</div>
</div>
<div class="panel-body">
@ -261,8 +261,8 @@
<div class="col-md-3" id="extra-information" style="width: 24.6vw">
<div class="panel panel-default right-side-hist">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Minimum Cost Boundary: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0" max="1" value="1", step="1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Cost Limiter: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0.1" max="1" value="1", step="0.1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
</div>
</div>
<div class="panel-body">

133
js/tsne_vis.js
Unescape View File

@ -2287,7 +2287,8 @@ if (points.length) { // If points exist (at least 1 point)
var findNearestTable = [];
var howManyPoints = 0;
for (let m=0; m<points.length; m++){
if (points[m].selected == true){
if (points[m].id == 257){
//if (points[m].selected == true){
howManyPoints = howManyPoints + 1;
selectedPoints.push(points[m]); // Add the selected points in to a new variable
}
@ -2304,8 +2305,8 @@ if (points.length) { // If points exist (at least 1 point)
var vw = viewport[0] * 0.5;
var vh = viewport[1] * 0.042;
var maxKNN = Math.round(document.getElementById("param-perplexity-value").value*1.25); // Specify the amount of k neighborhoods that we are going to calculate. According to "perplexity."
//var maxKNN = 3;
//var maxKNN = Math.round(document.getElementById("param-perplexity-value").value*1.25); // Specify the amount of k neighborhoods that we are going to calculate. According to "perplexity."
var maxKNN = 1;
selectedPoints.sort(function(a, b) { // Sort the points according to ID.
return parseFloat(a.id) - parseFloat(b.id);
});
@ -2355,6 +2356,7 @@ if (points.length) { // If points exist (at least 1 point)
}
return 0;
});
indexOrder2d[i] = indices2d[i].map(function(value) { return value[0]; });
}
indexOrderSliced[i] = indexOrder[i].slice(0,k);
@ -2698,6 +2700,8 @@ if (points.length) { // If points exist (at least 1 point)
var max = (d3.max(points,function(d){ return d.beta; }));
var min = (d3.min(points,function(d){ return d.beta; }));
// colors
var colorbrewer = ["#ffffcc","#ffeda0","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#bd0026","#800026"];
var calcStep = (max)/8;
@ -2705,13 +2709,25 @@ if (points.length) { // If points exist (at least 1 point)
.domain(d3.range(0, max+calcStep, calcStep))
.range(colorbrewer);
var costLimiter = document.getElementById("param-costlim").value;
var maxSize1 = (d3.max(points,function(d){ return d.cost; }));
var minSize1 = (d3.min(points,function(d){ return d.cost; }));
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var minSize1 = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (minSize1 > points[i].cost){
minSize1 = points[i].cost;
}
}
var rscale1 = d3.scaleLinear()
.domain([minSize1, maxSize1])
.range([5,parseInt(12-(1-document.getElementById("param-costlim").value)*7)]);
var calcStepSize1 = (maxSize1-minSize1);
var limitdist = document.getElementById("param-lim-value").value;
@ -2784,8 +2800,20 @@ if (points.length) { // If points exist (at least 1 point)
}
} else { // If we have cost into color then calculate the color scales
var costLimiter = document.getElementById("param-costlim").value;
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var min = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (min > points[i].cost){
min = points[i].cost;
}
}
var max = (d3.max(points,function(d){ return d.cost; }));
var min = (d3.min(points,function(d){ return d.cost; }));
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var minSize2 = (d3.min(points,function(d){ return d.beta; }));
@ -2796,36 +2824,11 @@ if (points.length) { // If points exist (at least 1 point)
d3.selectAll("#legend1 > *").remove();
if (document.getElementById("param-costlim").value*max < max){
var ordinal = d3.scaleOrdinal()
.domain(["0.00000"])
.range(["rgb(217,240,163)"]);
var svg = d3.select("#legend1");
svg.append("g")
.attr("class", "legendOrdinal")
.attr("transform", "translate(10,15)");
var legendOrdinal = d3.legendColor()
.title("KLD(P||Q)")
.cells(1)
.scale(ordinal);
svg.select(".legendOrdinal")
.call(legendOrdinal);
} else{
var colorbrewer = ['#d9f0a3','#addd8e','#78c679','#41ab5d','#238443','#006837','#004529'];
var calcStep = (max-min)/6;
var calcStep = ((max-min)/6);
var colorScale = d3.scaleLinear()
.domain(d3.range(min, max+calcStep, calcStep))
.range(colorbrewer);
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var labels_cost = [];
var abbr_labels_cost = [];
@ -2851,8 +2854,6 @@ if (points.length) { // If points exist (at least 1 point)
svg.select(".legendLinear")
.call(legend);
}
var calcStepSize2 = parseInt(maxSize2/2);
var limitdist = document.getElementById("param-lim-value").value;
@ -2995,15 +2996,18 @@ if (points.length) { // If points exist (at least 1 point)
var color = new THREE.Color(colorScale(points[i].beta));
}
else{
if (document.getElementById("param-costlim").value*max < max) {
var color = new THREE.Color("rgb(217,240,163)");
}
else {
var color = new THREE.Color(colorScale(points[i].cost));
}
if (points[i].cost < min){
var color = new THREE.Color("rgb(240,240,240)");
} else{
var color = new THREE.Color(colorScale(points[i].cost));
}
}
if (ColSizeSelector == "color") {
let sizePoint = rscale1(points[i].cost);
if (points[i].cost < minSize1){
var sizePoint = 1;
} else{
var sizePoint = rscale1(points[i].cost);
}
factorPlusSize = limitdist * sizePoint;
pointsGeometry.colors.push(color);
pointsMaterial = new THREE.PointsMaterial({
@ -3083,32 +3087,24 @@ if (points.length) { // If points exist (at least 1 point)
break;
} else {
var max = (d3.max(points,function(d){ return d.cost; }));
var min = (d3.min(points,function(d){ return d.cost; }));
var costLimiter = document.getElementById("param-costlim").value;
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;
})
var temp = parseInt((1-costLimiter)*points.length);
var min = points[temp].cost;
for (var i=temp+1; i<points.length; i++){
if (min > points[i].cost){
min = points[i].cost;
}
}
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var minSize2 = (d3.min(points,function(d){ return d.beta; }));
d3.selectAll("#legend1 > *").remove();
if (document.getElementById("param-costlim").value*max < max){
var ordinal = d3.scaleOrdinal()
.domain(["0.00000"])
.range(["rgb(217,240,163)"]);
var svg = d3.select("#legend1");
d3.select("#legend1");
svg.append("g")
.attr("class", "legendOrdinal")
.attr("transform", "translate(10,15)");
var legendOrdinal = d3.legendColor()
.title("KLD(P||Q)")
.scale(ordinal);
svg.select(".legendOrdinal")
.call(legendOrdinal);
} else{
var colorbrewer = ["#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#006837","#004529"];
var calcStep = (max-min)/6;
var colorScale = d3.scaleLinear()
@ -3141,7 +3137,6 @@ if (points.length) { // If points exist (at least 1 point)
svg.select(".legendLinear")
.call(legend);
}
}
}
}
@ -3331,7 +3326,15 @@ view.on("mouseleave", () => {
tooltip_state[Category] = "Point ID: " + datum.id;
tooltip_state.color = datum.id;
} else{
tooltip_state[Category] = datum[Category] + " (Point ID: " + datum.id + ")";
if (format[0] == "diabetes"){
if (datum[Category] == "1"){
tooltip_state[Category] = "Positive" + "(Point ID: " + datum.id + ")";
} else{
tooltip_state[Category] = "Negative" + " (Point ID: " + datum.id + ")";
}
} else{
tooltip_state[Category] = datum[Category] + " (Point ID: " + datum.id + ")";
}
tooltip_state.color = datum[Category];
}
tooltip_dimensions = [];

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