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fixed local PCA and workflow

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Angelos Chatzimparmpas 6 years ago
parent 853997eba8
commit 65d54dba72
3 changed files with 294 additions and 250 deletions
Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL
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  1. 57
      css/style.css
  2. 405
      index.html
  3. 78
      js/tsne_vis.js

57
css/style.css
Unescape View File

@ -11,6 +11,11 @@ html, body {
margin-top: 8px;
}
.btn{
font-size: 15px !important;
}
#param-correlation {
flex: 1;
display: flex;
@ -103,8 +108,7 @@ cursor: default;
}
.right-side-cor {
margin-left:12px;
margin-top: -60px;
margin-top: -125px;
}
.right-side-hist {
@ -112,12 +116,8 @@ cursor: default;
margin-top: 1px;
}
.right-side-star {
margin-left:12px;
margin-top: -50px;
}
#left-side-param{
.right-side-PCP {
margin-top: -57px;
}
#left-side-visual{
@ -131,7 +131,7 @@ cursor: default;
height: 50vw !important;
border: 1px solid black;
position: absolute;
margin-left: -7.5px;
margin-left: -15px;
z-index: 2;
}
@ -171,7 +171,8 @@ cursor: default;
.med-bottom {
margin-top: 6.7vw;
width: 50vw !important;
margin-left: -16px;
width: 50.1vw !important;
height: 5.4vw !important;
}
@ -180,7 +181,6 @@ cursor: default;
width: 50vw ;
height: 50vw ;
opacity: 1.0;
margin-left: 7.5px;
position:absolute;
z-index: 2;
}
@ -190,7 +190,7 @@ cursor: default;
height: 50vw;
opacity: 1.0;
position:absolute;
margin-left: -7.5px;
margin-left: -15px;
z-index: 2;
}
@ -207,24 +207,19 @@ circle.swatch{
margin-left: -6px;
}
/* Legend of the Overview t-SNE canvas */
.PoinRadius {
margin-top: 30px;
}
/* Legend of the Overview t-SNE canvas */
#legend1 {
height: 11vw;
height: 7vw;
width: 5vw;
margin-left:-10px;
margin-top: -5px;
text-align: left;
}
/* Legend of the Overview t-SNE canvas */
#legend4 {
height: 7vw;
width: 5vw;
margin-top:-80px;
margin-left:-10px;
margin-left: -20px;
margin-top: -10px;
text-align: left;
}
@ -255,7 +250,7 @@ svg#legend3 {
#PlotCost {
height: 3vw;
width: 11vw;
width: 8.1vw;
margin-left: -5px;
text-align: left;
z-index: 1;
@ -263,7 +258,7 @@ svg#legend3 {
#hider2 {
height: 3vw;
width: 11vw;
width: 8.4vw;
margin-left: -5px;
text-align: left;
background-color: white;
@ -271,12 +266,6 @@ svg#legend3 {
z-index: 2;
}
/* ShepardHeatmap Styling for the different rectangles used there */
rect {
stroke: #E6E6E6;
stroke-width: 1.5px;
}
.axis text {
font-size: 9pt;
fill: #000;
@ -408,14 +397,10 @@ rect {
/* Styling of the main SVG behind canvas */
#SvgAnnotator {
position: absolute;
margin-left:-7.5px;
margin-left:-15px;
z-index: 1;
}
#toggleAnnotator {
color: darkgray;
}
#selectionLabel{
border: 1px solid black;
padding: 5px 5px 5px 5px;
@ -437,7 +422,7 @@ rect {
/* Margins for the extra-information panel and the kNNInfo */
#extra-information {
margin-top: -5px;
margin-left: 5px;
margin-left: -12px;
}
#kNNInfo {
@ -456,6 +441,8 @@ rect {
/* Draw a red colored button for reset */
#FactRes{
color: red;
padding-right: 10px;
padding-left: 10px;
}
#isItLoaded {

405
index.html
Unescape View File

@ -33,6 +33,7 @@
<link rel="stylesheet" href="./css/bootstrap.min.css"/>
<link rel="stylesheet" href="./css/d3.parcoords.css">
<link rel="stylesheet" href="./css/reset.css">
<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.0/css/all.css" integrity="sha384-Mmxa0mLqhmOeaE8vgOSbKacftZcsNYDjQzuCOm6D02luYSzBG8vpaOykv9lFQ51Y" crossorigin="anonymous">
<!-- Bootstrap -->
<script src="./modules/bootstrap/bootstrap.min.js"></script>
@ -42,210 +43,259 @@
<body>
<div class="container-fluid">
<div class="row">
<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">t-SNE Overview</h2><div id="datasetDetails"style="display:inline-block; float:right"></div>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-6">
<div id="overviewRect"></div>
<div class="col-md-3">
<div class="panel panel-default" id="left-side-param">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">t-SNE Parameters</h2><div id="cost" style="display:inline-block; float:right"></div>
</div>
<div class="col-md-6">
<div style="display:block" id="CategoryName"></div>
<div class="legend" id = "legend2"></div>
<div class="panel-body">
<div id="control-panel" data-sr="enter left over 8s">
<div class="param">
<label id="data" for="param-dataset">Data sets</label>
<select id="param-dataset" name="param-dataset" onChange="changeDataset(this.value);">
<option value="diabetes.csv" selected>Pima Indian Diabetes</option>
<option value="breast-cancer-wisconsin.csv">Breast Cancer Wisconsin</option>
<option value="iris.csv">Iris</option>
<option value="winequality-red.csv">Red Wine - Quality</option>
<option value="empty">Upload New File</option>
</select>
<button type="button" class="button" id="FactRes" onclick="FactoryReset()">Factory reset</button>
</div>
<div class="param">
<label for="param-perplexity">Perplexity</label>
<input id="param-perplexity" type="range" min="5" max="100" value="30", step="1">
<output for="param-perplexity" id="param-perplexity-value">30</output>
</div>
<div class="param">
<label for="param-learningrate">Learning rate</label>
<input id="param-learningrate" type="range" min="1" max="150" value="10", step="1">
<output for="param-learningrate" id="param-learningrate-value">10</output>
</div>
<div class="param">
<div class="row">
<div class="col-md-3">
<label for="param-maxiter" style="padding: 25px 0 0 8px">Max iterations</label>
</div>
<div class="col-md-4" style="padding: 25px 0 0 0px">
<input id="param-maxiter" type="range" min="10" max="1000" value="500", step="10" >
</div>
<div class="col-md-1">
<output for="param-maxiter" id="param-maxiter-value" style="padding: 25px 0 0 0" >500</output>
</div>
<div class="col-md-4">
<div id="hider2"></div>
<div id="PlotCost"></div>
</div>
</div>
</div>
<div class="param">
<label for="param-distance">Distance metric</label>
<select id="param-distance" name="param-distance">
<option value="euclideanDist" selected>Euclidean distance</option>
<option value="jaccardDist">Jaccard dissimilarity</option>
</select>
<input id="file-input" type="file" name="name" style="display: none;" />
<button type="button" class="button" onclick='loadAnalysis();' style="padding:0 12px 0 12px">Load execut.</button>
</div>
<div class="param">
<label for="param-transform">Data transform</label>
<select id="param-transform" name="param-transform">
<option value="noTrans" selected>No transform</option>
<option value="logTrans">Log10</option>
<option value="asinhTrans">Asinh</option>
<option value="binTrans">Binarize</option>
</select>
<button type="button" class="button" onclick="SaveAnalysis()" style="padding:0 10px 0 10px">Store execut.</button>
</div>
<div class="row">
<div class="col-md-8">
<p><div id="run-button"><button id="ExecuteBut" class="btn btn-primary btn-block" onclick="getData();" value="Execute new t-SNE analysis" style="margin-top: 4px"><i class="fas fa-running fa-lg" style="margin-right: 10px"></i>Execute new t-SNE analysis</button></div></p>
</div>
<div class="col-md-4" style="margin-top: 10px">
<label>
<input id="downloadDists" checked type="checkbox">
Distances cached on "Store execution"
</label>
</div>
</div>
</div>
</div>
</div>
</div>
<div id="control-panel" class="PoinRadius">
<div class="param">
<label for="param-lim" >Points radius scaling factor</label>
<input id="param-lim" type="range" min="1" max="3" value="3", step="0.5" onchange="setReInitialize(true);">
<output for="param-lim" id="param-lim-value" >3</output>
</div>
</div>
</div>
</div>
<div class="col-md-6">
<svg id="SvgAnnotator"></svg>
<svg id="modtSNEcanvas_svg"></svg>
<svg id="modtSNEcanvas_svg_Schema"></svg>
<div id="modtSNEDiv">
<canvas id = "modtSNEcanvas" ></canvas>
</div>
</div>
<div class="col-md-1" style="width: 3.499999995%">
<svg id="legend1"></svg>
<svg id="legend4"></svg>
</div>
<div class="col-md-2" style="width: 21.499999995%">
<div class="col-md-2" style="width: 24.999999995%">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Select Different Modes</h2>
<h2 class="panel-title">Interaction/Mode Selection</h2>
</div>
<div class="panel-body">
<div id="resetAllFilters" style="margin-bottom: 40px">
<button class="btn btn-info btn-block active" onclick="setLayerProj();">t-SNE points exploration</button>
<button class="btn btn-info btn-block" onclick="setLayerComp();">Points selection and data features comparison</button>
<button class="btn btn-info btn-block" onclick="setLayerSche();">Schema investigation</button>
<div id="resetAllFilters" style="margin-bottom: 20px">
<button class="btn btn-info active" onclick="setLayerProj();"><i class="fas fa-mouse-pointer fa-lg" style="margin-right: 10px"></i>Points interaction</button>
<button class="btn btn-info" onclick="setLayerComp();"><i class="far fa-object-group fa-lg" style="margin-right: 10px" ></i>Points lasso selection</button>
<button class="btn btn-info" onclick="setLayerSche();"><i class="fas fa-draw-polygon fa-lg" style="margin-right: 10px"></i>Feature correlation</button>
</div>
<button class="btn btn-info btn-block" onclick="setReset();">Reset all filters</button>
<label style="margin-top: 15px">
<input id="controls" type="checkbox">
Hide annotations' controllers
</label>
<label style="margin-top: 15px">
<input id="downloadDists" checked type="checkbox">
Distances cache (Save Exec.)
</label>
<button class="btn btn-info" onclick="setReset();" style="margin-left: 200px"><i class="fas fa-trash-alt fa-lg" style="margin-right: 10px"></i>Reset interactions</button>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Shepard Heatmap</h2>
</div>
<div class="panel-body">
<div class="row">
<div class="col-md-6">
<svg id="sheparheat"></svg>
</div>
<div class="col-md-2">
<svg id="legend3"></svg>
<div id="hider2"></div>
<div id="PlotCost"></div>
<div class="col-md-3" style="margin-top:-4px">
<div class="panel panel-default" style="padding-bottom: 35px;">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">t-SNE Overview</h2><div id="datasetDetails"style="display:inline-block; float:right"></div>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-6">
<div id="overviewRect"></div>
</div>
<div class="col-md-6">
<div style="display:block" id="CategoryName"></div>
<div class="legend" id = "legend2"></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default right-side-cor">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">Correl. Schema Investigation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Min. Visible Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.0</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.0", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default" style="margin-top: -195px">
<div class="panel-heading">
<h2 class="panel-title">Visual Mapping</h2>
</div>
</div>
<div class="panel-body">
<svg id="correlation"></svg>
</div>
</div>
</div>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-12">
<div class="row">
<div class="col-md-8">
<div class="param" style="padding: 5px 0 5px 0">
<label for="male" ></label>Density (1/sigma)</label>
<select id="param-neighborHood" name ="param-neighborHood" onchange="setReInitialize(true);" style="display:inline-block;margin-left: 60px">
<option selected="selected" value="color" >Color-encoding</option>
<option value="size">Size-encoding</option>
</select>
</div>
<div class="param" style="padding: 10px 0 10px 0" >
<output for="param-neighborHood" id="param-neighborHood-value " ></output>
<label for="male">Final remaining cost (KLD)</label>
<label id="selectionLabel" style="margin-top:4px; margin-left: 10px">Size-encoding</label>
</div>
<div class="param">
<div class="row" style="margin-top: 30px">
<div class="col-md-6">
<label for="param-corr">Correlation threshold</label>
</div>
<div class="col-md-5">
<input id="param-corr" type="range" min="0" max="750" value="150", step="25" onchange="CalculateCorrel(true);" style="margin-left: -20px;">
</div>
<div class="col-md-1">
<output for="param-corr" id="param-corr-value" style="margin-left: -20px;">150</output>
</div>
</div>
</div>
<div class="param">
<div class="row" style="margin-top: 30px">
<div class="col-md-6">
<label for="param-lim" >Points radius scaling</label>
</div>
<div class="col-md-5">
<input id="param-lim" type="range" min="1" max="3" value="3", step="0.5" onchange="setReInitialize(true);" style="margin-left: -20px;">
</div>
<div class="col-md-1">
<output for="param-lim" id="param-lim-value" style="margin-left: -20px;">3</output>
</div>
</div>
</div>
</div>
<div class="col-md-2">
<svg id="legend1"></svg>
</div>
<div class="col-md-2">
<svg id="legend4"></svg>
</div>
</div>
<div class="annotationAllClass" style="margin-top: 30px">
<label style="padding-bottom: 0px">
<input id="controls" type="checkbox" style="margin-top: 18px">
Hide annotations' controllers</input>
<button class="btn btn-default" onclick="BringBackAnnotations();" style="display:inline-block; float:right; margin-left:178px"><i class="fas fa-eye fa-lg" style="margin-right: 10px"></i>Reveal annotations</button>
</label>
<div id="param-correlation">
Annotation: <textarea type="text" id="comment" name="textforAnnotator" placeholder="Please, provide your comment."></textarea>
</div>
<div id="commBtn">
<div class="param" style="margin-top:10px">
<div id="toggleAnnotator" style= "margin-left: -120px"><button class="btn btn-default" onclick="setAnnotator();" style="display:inline-block; float:left; margin-left: 120px" ><i class="fas fa-comment fa-lg" style="margin-right: 10px"></i>Add annotation</button></div>
<div id="continue"></div><button class="btn btn-default active" onclick="setContinue();" style="display:inline-block; float:middle; margin-left: 6px"><i class="fas fa-chart-line fa-lg" style="margin-right: 10px"></i>Continue the analysis</button></div>
<button class="btn btn-default" onclick="deleteAnnotations();" style="display:inline-block; float:right; margin-top: -45px" ><i class="fas fa-comment-slash fa-lg" style="margin-right: 10px"></i>Delete annotations</button>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3">
<div class="panel panel-default" id="left-side-param">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">t-SNE Parameters</h2><div id="cost" style="display:inline-block; float:right"></div>
</div>
<div class="panel-body">
<div id="control-panel" data-sr="enter left over 8s">
<div class="param">
<label id="data" for="param-dataset">Data sets</label>
<select id="param-dataset" name="param-dataset" onChange="changeDataset(this.value);">
<option value="diabetes.csv" selected>Pima Indian Diabetes</option>
<option value="breast-cancer-wisconsin.csv">Breast Cancer Wisconsin</option>
<option value="iris.csv">Iris</option>
<option value="winequality-red.csv">Red Wine - Quality</option>
<option value="empty">Upload New File</option>
</select>
<button type="button" class="button" id="FactRes" onclick="FactoryReset()">Factory Reset</button>
<div class="col-md-3" style="margin-top:-4px">
<div class="panel panel-default" style="padding-bottom : 60px">
<div class="panel-heading">
<h2 class="panel-title">Shepard Heatmap</h2>
</div>
<div class="panel-body">
<div class="row">
<div class="col-md-6">
<svg id="sheparheat"></svg>
</div>
<div class="col-md-2">
<svg id="legend3"></svg>
</div>
</div>
<div class="param">
<label for="param-perplexity">Perplexity</label>
<input id="param-perplexity" type="range" min="5" max="100" value="30", step="1">
<output for="param-perplexity" id="param-perplexity-value">30</output>
</div>
<div class="param">
<label for="param-learningrate">Learning rate</label>
<input id="param-learningrate" type="range" min="1" max="150" value="10", step="1">
<output for="param-learningrate" id="param-learningrate-value">10</output>
</div>
<div class="param">
<label for="param-maxiter">Max iterations</label>
<input id="param-maxiter" type="range" min="10" max="1000" value="500", step="10">
<output for="param-maxiter" id="param-maxiter-value">500</output>
</div>
<div class="param">
<label for="param-distance">Distance metric</label>
<select id="param-distance" name="param-distance">
<option value="euclideanDist" selected>Euclidean distance</option>
<option value="jaccardDist">Jaccard dissimilarity</option>
</select>
<input id="file-input" type="file" name="name" style="display: none;" />
<button type="button" class="button" onclick='loadAnalysis();'>Load Execut.</button>
</div>
<div class="param">
<label for="param-transform">Data transform</label>
<select id="param-transform" name="param-transform">
<option value="noTrans" selected>No transform</option>
<option value="logTrans">Log10</option>
<option value="asinhTrans">Asinh</option>
<option value="binTrans">Binarize</option>
</select>
<button type="button" class="button" onclick="SaveAnalysis()">Save Execut.</button>
</div>
<p><div id="run-button"><button id="ExecuteBut" class="btn btn-primary btn-block" onclick="getData();" value="Execute new t-SNE analysis">Execute new t-SNE analysis</button></div></p>
</div>
</div>
</div>
</div>
</div>
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default right-side-star">
<div class="panel-heading">
<h2 class="panel-title">Parallel Coordinates Plot (with Local PCA Calculation)</h2>
<div class="panel panel-default right-side-cor">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block">Feature Correlation</h2><div class="param" style="display:inline-block; float:right"><label for="param-corlim" style="display:inline-block; float: right">Min. Visible Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.0</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.0", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
</div>
</div>
<div class="panel-body">
<svg id="correlation"></svg>
</div>
</div>
<div class="panel-body">
<div id="PCP" class="parcoords"></div>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3">
<div class="panel panel-default" id="left-side-visual">
<div class="col-md-3" id="extra-information" style="width: 24.8vw">
<div class="panel panel-default right-side-hist">
<div class="panel-heading">
<h2 class="panel-title">Visual Mapping Parameters</h2>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-12">
<div id="ThumbNailsList">
<div class="param" >
<label for="male">Density (1/sigma)</label>
<select id="param-neighborHood" name ="param-neighborHood" onchange="setReInitialize(true);" style="display:inline-block">
<option selected="selected" value="color">Color-encoding</option>
<option value="size">Size-encoding</option>
</select>
<button class="button" onclick="deleteAnnotations();" style="display:inline-block; float:right">Delete Annotations</button>
</div>
<output for="param-neighborHood" id="param-neighborHood-value"></output>
<label for="male">Final Cost (Kullback-Leibler Divergence)</label>
<label id="selectionLabel" style="margin-top:4px">Size-encoding</label>
<div id="param-correlation">
<div class="param">
<label for="param-corr">Correlation threshold</label>
<input id="param-corr" type="range" min="0" max="750" value="150", step="25" onchange="CalculateCorrel(true);">
<output for="param-corr" id="param-corr-value">150</output>
</div>
Annotation: <textarea type="text" id="comment" name="textforAnnotator" style="margin-top:4px" placeholder="Please, provide your comment."></textarea>
</div>
<div id="commBtn">
<div class="param" style="margin-top:4px">
<div id="toggleAnnotator"><button class="btn btn-default btn-block" onclick="setAnnotator();">Addition of a new comment</button></div>
</div>
<div class="param" style="margin-top:4px">
<div id="continue"><button class="btn btn-default btn-block active" onclick="setContinue();">Continuation of the analysis</button></div>
</div>
</div>
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Cost Acceptance Range: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0.1" max="1" value="1", step="0.1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
</div>
</div>
</div>
<div class="panel-body">
<div id="costHist"></div>
</div>
</div>
</div>
</div>
</div>
<div class = col-md-6>
<div class="panel panel-default med-bottom">
@ -258,17 +308,16 @@
</div>
</div>
</div>
<div class="col-md-3" id="extra-information" style="width: 24.6vw">
<div class="panel panel-default right-side-hist">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block;">1/sigma and KLD Distributions</h2><div class="param" style="display:inline-block; float:right"><label for="param-costlim" style="display:inline-block; float: right">Cost Acceptance Range: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0.1" max="1" value="1", step="0.1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
</div>
</div>
<div class="panel-body">
<div id="costHist"></div>
</div>
<div class="col-md-3">
<div class="panel panel-default right-side-PCP">
<div class="panel-heading">
<h2 class="panel-title">Parallel Coordinates Plot (with Local PCA Calculation)</h2>
</div>
<div class="panel-body">
<div id="PCP" class="parcoords"></div>
</div>
</div>
</div>
</div>
</div>
@ -297,7 +346,7 @@
for (var i = 0; i < btns.length; i++) {
btns[i].addEventListener("click", function() {
let current = document.getElementById("commBtn").getElementsByClassName("active");
current[0].className = current[0].className.replace("btn btn-default btn-block active", "btn btn-default btn-block");
current[0].className = current[0].className.replace("btn btn-default active", "btn btn-default");
this.className += " active";
});
}
@ -311,7 +360,7 @@
for (var i = 0; i < btns2.length; i++) {
btns2[i].addEventListener("click", function() {
let current = document.getElementsByClassName("active");
current[0].className = current[0].className.replace("btn btn-info btn-block active", "btn btn-info btn-block");
current[0].className = current[0].className.replace("btn btn-info active", "btn btn-info");
this.className += " active";
});
}

78
js/tsne_vis.js
Unescape View File

@ -363,10 +363,15 @@ function deleteAnnotations(){
d3.selectAll("#SvgAnnotator > *").remove();
}
function BringBackAnnotations(){
d3.select("#SvgAnnotator").style("z-index", 3);
}
function setAnnotator(){ // Set a new annotation on top of the main visualization.
vw2 = dimensions;
vh2 = dimensions;
var textarea = document.getElementById("comment").value;
d3.select("#SvgAnnotator").style("z-index", 3);
@ -403,6 +408,8 @@ function setAnnotator(){ // Set a new annotation on top of the main visualizatio
gAnnotationsAll.push(gAnnotations);
AnnotationsAll.push(annotations);
draggable.push(true);
document.getElementById("comment").value = '';
$('#comment').removeAttr('placeholder');
}
// Hide or show the controls
@ -480,6 +487,7 @@ function MainVisual(){
// fields variable is all the features (columns) plus beta and cost strings.
function init(data, results_all, fields) {
$('#comment').attr('placeholder', "Please, provide your comment.");
ArrayWithCosts = [];
Iterations = [];
VisiblePoints = [];
@ -791,7 +799,7 @@ function OverallCostLineChart(){
var layout = {
showlegend: false,
width: 285,
width: 215,
height: 80,
xaxis:{title: 'Iterations',
titlefont: {
@ -1000,7 +1008,7 @@ function ShepardHeatMap () {
// Color scale for minimum and maximum values for the shepard heatmap.
var maxNum = Math.round(d3.max(data,function(d){ return d.value; }));
var minNum = Math.round(d3.min(data,function(d){ return d.value; }));
var colors = ['#ffffff','#f0f0f0','#d9d9d9','#bdbdbd','#969696','#737373','#525252','#252525','#000000'];
var colors = ["#f7fbff","#deebf7","#c6dbef","#9ecae1","#6baed6","#4292c6","#2171b5","#08519c","#08306b"];
let calcStep = (maxNum-minNum)/colors.length;
var colorScale = d3.scaleLinear()
.domain(d3.range(0, maxNum+calcStep,calcStep))
@ -1283,7 +1291,7 @@ function CostHistogram(points){
name: '1/sigma',
autobinx: false,
marker: {
color: "rgb(128,0,0)",
color: "rgb(0,128,0)",
line: {
color: "rgb(0, 0, 0)",
width: 1
@ -1309,7 +1317,7 @@ function CostHistogram(points){
autobinx: false,
histnorm: "count",
marker: {
color: "rgb(0,128,0)",
color: "rgb(128,0,0)",
line: {
color: "rgb(0, 0, 0)",
width: 1
@ -1435,10 +1443,10 @@ var zoomer = d3v3.behavior.zoom()
// Margin of the main barchart
var main_margin = {top: 8, right: 10, bottom: 30, left: 100},
main_width = 500 - main_margin.left - main_margin.right,
main_height = 320 - main_margin.top - main_margin.bottom;
main_height = 350 - main_margin.top - main_margin.bottom;
// Margin of the mini barchart
var mini_margin = {top: 8, right: 10, bottom: 30, left: 10},
mini_height = 320 - mini_margin.top - mini_margin.bottom;
mini_height = 350 - mini_margin.top - mini_margin.bottom;
mini_width = 100 - mini_margin.left - mini_margin.right;
// Create the svg correlation component
@ -2489,8 +2497,14 @@ if (points.length) { // If points exist (at least 1 point)
}
}
}
var vectors = PCA.getEigenVectors(ArrayContainsDataFeaturesClearedwithoutNull); // Run a local PCA!
var PCAResults = PCA.computeAdjustedData(ArrayContainsDataFeaturesClearedwithoutNull,vectors[0]); // Get the results for individual dimension.
var FeaturesSelectedPoints = [];
for (var i=0; i< selectedPoints.length; i++){
FeaturesSelectedPoints.push(ArrayContainsDataFeaturesClearedwithoutNull[selectedPoints[i].id]);
}
var vectors = PCA.getEigenVectors(FeaturesSelectedPoints); // Run a local PCA!
var PCAResults = PCA.computeAdjustedData(FeaturesSelectedPoints,vectors[0]); // Get the results for individual dimension.
var PCASelVec = [];
PCASelVec = PCAResults.selectedVectors[0];
@ -2609,7 +2623,7 @@ if (points.length) { // If points exist (at least 1 point)
.alpha(0.35)
.composite("darken")
.hideAxis([Category])
.margin({ top: 20, left: 0, bottom: 10, right: -5 })
.margin({ top: 20, left: 0, bottom: 10, right: -8 })
.mode("default")
.color(function(d){if(format[0] == "diabetes"){if(d[Category] == "Negative"){return colorScaleCat("Positive");}else{return colorScaleCat("Negative");}} else{return colorScaleCat(d[Category]);}})
.render()
@ -2622,7 +2636,7 @@ if (points.length) { // If points exist (at least 1 point)
.data(AllPointsWrapData2)
.composite("darken")
.hideAxis([Category])
.margin({ top: 20, left: 0, bottom: 10, right: -5 })
.margin({ top: 20, left: 0, bottom: 10, right: -8 })
.mode("default")
.color(function(d){if(format[0] == "diabetes"){if(d[Category] == "Negative"){return colorScaleCat("Positive");}else{return colorScaleCat("Negative");}} else{return colorScaleCat(d[Category]);}})
.render()
@ -2641,14 +2655,7 @@ if (points.length) { // If points exist (at least 1 point)
var max = (d3.max(points,function(d){ return d.beta; }));
var min = (d3.min(points,function(d){ return d.beta; }));
// colors
var colorbrewer = ["#ffffcc","#ffeda0","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#bd0026","#800026"];
var calcStep = (max)/8;
var colorScale = d3.scaleLinear()
.domain(d3.range(0, max+calcStep, calcStep))
.range(colorbrewer);
var costLimiter = document.getElementById("param-costlim").value;
@ -2677,9 +2684,10 @@ if (points.length) { // If points exist (at least 1 point)
.domain(d3.range(minSize1, maxSize1+calcStepSize1, calcStepSize1))
.range([5*limitdist/2,(parseInt(12-(1-document.getElementById("param-costlim").value)*7))*limitdist/2]);
var colorScale = d3.scaleLinear()
.domain(d3.range(0, max+calcStep, calcStep))
.range(colorbrewer);
var colorScale = d3.scaleSequential()
.domain([0, max+calcStep])
.interpolator(d => d3.interpolateViridis(1-d));
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.beta - b.beta;
})
@ -2735,7 +2743,7 @@ if (points.length) { // If points exist (at least 1 point)
var circles = document.getElementsByClassName("swatch");
for (var i=0; i<circles.length; i++){
if(circles[i].localName == "circle"){
circles[i].style.fill = "rgb(0,128,0)";
circles[i].style.fill = "rgb(128,0,0)";
}
}
} else { // If we have cost into color then calculate the color scales
@ -2754,6 +2762,7 @@ if (points.length) { // If points exist (at least 1 point)
}
var max = (d3.max(points,function(d){ return d.cost; }));
var min = (d3.min(points,function(d){ return d.cost; }));
var maxSize2 = (d3.max(points,function(d){ return d.beta; }));
var minSize2 = (d3.min(points,function(d){ return d.beta; }));
@ -2764,16 +2773,16 @@ if (points.length) { // If points exist (at least 1 point)
d3.selectAll("#legend1 > *").remove();
var colorbrewer = ['#d9f0a3','#addd8e','#78c679','#41ab5d','#238443','#006837','#004529'];
var calcStep = ((max-min)/6);
var colorScale = d3.scaleLinear()
.domain(d3.range(min, max+calcStep, calcStep))
.range(colorbrewer);
var calcStep = ((max-min)/8);
var colorScale = d3.scaleSequential()
.domain([min, max])
.interpolator(d => d3.interpolateMagma(1-d));
var labels_cost = [];
var abbr_labels_cost = [];
labels_cost = d3.range(min, max+calcStep, calcStep);
for (var i=0; i<7; i++){
for (var i=0; i<9; i++){
labels_cost[i] = labels_cost[i].toFixed(5);
abbr_labels_cost[i] = abbreviateNumber(labels_cost[i]);
}
@ -2786,8 +2795,8 @@ if (points.length) { // If points exist (at least 1 point)
var legend = d3.legendColor()
.labelFormat(d3.format(",.5f"))
.cells(7)
.labels([abbr_labels_cost[0],abbr_labels_cost[1],abbr_labels_cost[2],abbr_labels_cost[3],abbr_labels_cost[4],abbr_labels_cost[5],abbr_labels_cost[6]])
.cells(9)
.labels([abbr_labels_cost[0],abbr_labels_cost[1],abbr_labels_cost[2],abbr_labels_cost[3],abbr_labels_cost[4],abbr_labels_cost[5],abbr_labels_cost[6],abbr_labels_cost[7],abbr_labels_cost[8]])
.title("KLD(P||Q)")
.scale(colorScale);
@ -2833,7 +2842,7 @@ if (points.length) { // If points exist (at least 1 point)
var circles = document.getElementsByClassName("swatch");
for (var i=0; i<circles.length; i++){
if(circles[i].localName == "circle"){
circles[i].style.fill = "rgb(128,0,0)";
circles[i].style.fill = "rgb(0,128,0)";
}
}
@ -3024,7 +3033,6 @@ if (points.length) { // If points exist (at least 1 point)
break;
} else {
var max = (d3.max(points,function(d){ return d.cost; }));
var costLimiter = document.getElementById("param-costlim").value;
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
@ -3042,11 +3050,11 @@ if (points.length) { // If points exist (at least 1 point)
d3.selectAll("#legend1 > *").remove();
var colorbrewer = ["#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#006837","#004529"];
var calcStep = (max-min)/6;
var colorScale = d3.scaleLinear()
.domain(d3.range(min, max+calcStep, calcStep))
.range(colorbrewer);
var colorScale = d3.scaleSequential()
.domain([min, max])
.interpolator(d => d3.interpolateMagma(1-d));
points = points.sort(function(a, b) { // Sort them according to importance (darker color!)
return a.cost - b.cost;

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