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Former-commit-id: 0f0dfbe703
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Angelos Chatzimparmpas 5 years ago
parent 054863d941
commit 62dbdb3e52
3 changed files with 23 additions and 8 deletions
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  1. 15
      data/Data_Cortex_Nuclear.csv
  2. 10
      index.html
  3. 6
      js/tsne_vis.js

15
data/Data_Cortex_Nuclear.csv
Unescape View File

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MouseID,DYRK1A_N,ITSN1_N,BDNF_N,NR1_N,NR2A_N,pAKT_N,pBRAF_N,pCAMKII_N,pCREB_N,pELK_N,pERK_N,pJNK_N,PKCA_N,pMEK_N,pNR1_N,pNR2A_N,pNR2B_N,pPKCAB_N,pRSK_N,AKT_N,BRAF_N,CAMKII_N,CREB_N,ELK_N,ERK_N,GSK3B_N,JNK_N,MEK_N,TRKA_N,RSK_N,APP_N,Bcatenin_N,SOD1_N,MTOR_N,P38_N,pMTOR_N,DSCR1_N,AMPKA_N,NR2B_N,pNUMB_N,RAPTOR_N,TIAM1_N,pP70S6_N,NUMB_N,P70S6_N,pGSK3B_N,pPKCG_N,CDK5_N,S6_N,ADARB1_N,AcetylH3K9_N,RRP1_N,BAX_N,ARC_N,ERBB4_N,nNOS_N,Tau_N,GFAP_N,GluR3_N,GluR4_N,IL1B_N,P3525_N,pCASP9_N,PSD95_N,SNCA_N,Ubiquitin_N,pGSK3B_Tyr216_N,SHH_N,BAD_N,BCL2_N,pS6_N,pCFOS_N,SYP_N,H3AcK18_N,EGR1_N,H3MeK4_N,CaNA_N,Genotype,Treatment,Behavior,class*
309_1,0.503643884,0.747193224,0.4301753,2.81632854,5.990151664,0.218830018,0.177565491,2.373744337,0.232223754,1.750935592,0.687906244,0.306381721,0.402698444,0.296927319,1.022060272,0.605672641,1.877683671,2.308745322,0.44159937,0.859365767,0.416289147,0.369608036,0.178944258,1.866358085,3.685247193,1.537226709,0.264526295,0.319676975,0.813866457,0.165845972,0.453909789,3.037620642,0.369509553,0.458538507,0.335335828,0.825192043,0.576915501,0.448099271,0.58627142,0.394721292,0.339570613,0.482863896,0.294169785,0.182150472,0.84272515,0.192608387,1.443090669,0.29469997,0.354604528,1.339069956,0.170118794,0.159102447,0.18885166,0.106305209,0.144989339,0.176667682,0.125190375,0.115290892,0.228043456,0.14275561,0.430957458,0.247537821,1.603309981,2.014874607,0.108234339,1.044979186,0.831556503,0.18885166,0.122652046,,0.106305209,0.108335872,0.427099198,0.114783227,0.131790029,0.128185603,1.67565235,Control,Memantine,C/S,c-CS-m
309_2,0.51461708,0.689063548,0.411770344,2.789514042,5.685037861,0.211636155,0.172817023,2.292149909,0.226972108,1.596376881,0.69500623,0.299051088,0.385986773,0.281318892,0.956675932,0.587558708,1.725773986,2.043036519,0.445221892,0.834659254,0.400364229,0.356177514,0.17367967,1.761046679,3.48528707,1.509249497,0.25572702,0.304418672,0.780504169,0.157193521,0.430940286,2.921882488,0.342279306,0.423559858,0.324834659,0.761717627,0.545097287,0.420876066,0.545097287,0.368254577,0.321959168,0.454519314,0.276430557,0.182086309,0.847614612,0.194815275,1.439459795,0.294059816,0.354548277,1.306323088,0.171427093,0.158128945,0.184570009,0.106592156,0.150470868,0.178309014,0.13427507,0.118234503,0.238073062,0.142036635,0.457156163,0.257632205,1.671737556,2.004605195,0.109748525,1.009883059,0.849270413,0.200403601,0.11668219,,0.106592156,0.10431543,0.441581289,0.111973507,0.13510297,0.1311187,1.743609645,Control,Memantine,C/S,c-CS-m
309_3,0.509183088,0.730246795,0.418308781,2.687201071,5.622058542,0.209010905,0.175722212,2.283336522,0.230246795,1.561316243,0.677348383,0.291276067,0.381002487,0.28171035,1.003634972,0.602448823,1.731872967,2.017983547,0.467667878,0.814329443,0.399846949,0.36808877,0.173904725,1.765544289,3.571455902,1.501243543,0.259613545,0.3117467,0.785154008,0.160895351,0.423187297,2.944136216,0.343696193,0.425004783,0.324851731,0.757030802,0.543619667,0.404629807,0.552994069,0.363879855,0.3130859,0.447197245,0.256648173,0.18438769,0.856165847,0.200737337,1.52436418,0.301880744,0.386086771,1.279600342,0.185456294,0.148696303,0.190532165,0.108303056,0.145330199,0.176212866,0.132560376,0.117760205,0.244817269,0.142444967,0.510472323,0.255343022,1.663549904,2.016830519,0.108196196,0.996847617,0.846708698,0.193684548,0.118508228,,0.108303056,0.106219278,0.435776875,0.111882881,0.133361829,0.127431075,1.926426587,Control,Memantine,C/S,c-CS-m
309_4,0.442106692,0.61707615,0.358626307,2.466947197,4.97950319,0.222885842,0.176462604,2.152300801,0.207004208,1.595086195,0.583276775,0.296728655,0.37708701,0.313831953,0.875390254,0.520293199,1.566852179,2.132754174,0.477670694,0.727704629,0.385638659,0.362970001,0.179448894,1.286276639,2.970137098,1.419709515,0.259535768,0.279218135,0.734491652,0.162209855,0.410614904,2.500203611,0.344509298,0.429211348,0.330120809,0.746979775,0.54676259,0.386860323,0.547848514,0.366770734,0.328491923,0.442649654,0.398534003,0.161767701,0.760233521,0.184169439,1.612382051,0.29638178,0.290679519,1.19876451,0.159799063,0.16611228,0.185323468,0.103183762,0.14065576,0.163804222,0.123209558,0.117439413,0.234946711,0.145068223,0.430995859,0.251103116,1.484624262,1.957233046,0.119883239,0.990224696,0.833276763,0.192111873,0.13278121,,0.103183762,0.111261965,0.391690992,0.130405268,0.147444165,0.146901093,1.700563438,Control,Memantine,C/S,c-CS-m
309_5,0.434940244,0.617429838,0.358802202,2.36578488,4.718678663,0.213105949,0.173626964,2.134013697,0.192157916,1.504229891,0.550960118,0.286961192,0.363502081,0.277964281,0.864912045,0.507989795,1.480059084,2.013696791,0.483416141,0.687793742,0.367530549,0.355310863,0.174835504,1.324694508,2.896334094,1.35987646,0.250704982,0.273667249,0.702699073,0.154827447,0.398549752,2.456559688,0.329125822,0.408755203,0.313414798,0.691956493,0.536860481,0.360816436,0.512823956,0.35155096,0.312206258,0.419094938,0.393447026,0.16020025,0.768112919,0.185718259,1.645807259,0.29682937,0.309345015,1.206994855,0.164650257,0.16068697,0.188221388,0.104783757,0.141983034,0.167709637,0.136837714,0.116047838,0.255527743,0.140870533,0.481226533,0.25177305,1.534835211,2.009108608,0.119524406,0.997774997,0.878667779,0.205604228,0.129954109,,0.104783757,0.110693923,0.434153803,0.118481435,0.140314282,0.148379919,1.839730218,Control,Memantine,C/S,c-CS-m
309_6,0.447506385,0.62817583,0.36738809,2.38593897,4.807635435,0.218577766,0.176233365,2.14128243,0.195187525,1.442398172,0.566339562,0.289823901,0.363892996,0.26683694,0.85912085,0.521306627,1.538244388,1.968275306,0.495899987,0.672402205,0.36940449,0.357171663,0.179728458,1.227449926,2.956983466,1.447909665,0.250840167,0.284043554,0.704395752,0.156875924,0.391047184,2.467132679,0.327597795,0.404489851,0.296276381,0.674418605,0.539723081,0.354214276,0.51431644,0.347224089,0.303132141,0.412824304,0.382578304,0.162330317,0.77969457,0.186792986,1.634615385,0.28803733,0.332367081,1.12344457,0.175692873,0.150593891,0.183823529,0.106476244,0.13956448,0.174844457,0.130514706,0.115243213,0.236849548,0.13645362,0.478577489,0.244485294,1.507777149,2.003535068,0.120687217,0.920178167,0.843679299,0.190469457,0.131575226,,0.106476244,0.109445701,0.439833145,0.11665724,0.140766403,0.14218043,1.816388575,Control,Memantine,C/S,c-CS-m
309_7,0.428032684,0.573695789,0.342708988,2.334223759,4.473130107,0.225172847,0.184003771,2.012413576,0.195788812,1.612036455,0.509899434,0.299654305,0.37115022,0.277655563,0.844280327,0.485386549,1.494814582,2.01257071,0.497485858,0.646134507,0.395977373,0.359522313,0.186046512,1.10779384,2.599622879,1.364236329,0.261470773,0.276241358,0.693117536,0.162162162,0.405562539,2.288812068,0.345380264,0.427561282,0.333909491,0.757542426,0.558610937,0.368950346,0.544626021,0.360307982,0.329352608,0.420490258,0.465116279,0.145565999,0.70224765,0.177033102,1.773845525,0.292194524,0.266857376,1.03228443,0.147854516,0.149816101,0.181610135,0.097834083,0.142787086,0.15185942,0.115978749,0.114752758,0.22451982,0.144830405,0.415529219,0.238005721,1.338782182,1.861708214,0.117041275,1.028769922,0.798283613,0.181610135,0.141806293,,0.097834083,0.111483449,0.406293421,0.13722926,0.156681651,0.157498978,1.528483858,Control,Memantine,C/S,c-CS-m
309_8,0.416922604,0.564035627,0.327702703,2.260135135,4.268734644,0.214834152,0.179668305,2.007985258,0.18980344,1.424600737,0.501074939,0.283015971,0.358875921,0.256449631,0.818642506,0.478501229,1.409398034,1.85703317,0.48955774,0.628071253,0.360718673,0.360718673,0.171836609,1.077395577,2.550214988,1.316646192,0.250614251,0.265356265,0.676597052,0.159551597,0.375460688,2.281173219,0.328163391,0.407248157,0.322788698,0.695178133,0.525030713,0.340141278,0.50982801,0.338298526,0.298525799,0.39296683,0.44041769,0.147848101,0.681940928,0.174599156,1.795780591,0.288523207,0.288607595,1.152067511,0.152405063,0.154514768,0.182869198,0.099493671,0.140168776,0.158734177,0.119578059,0.116202532,0.246835443,0.13443038,0.451139241,0.241434599,1.386075949,1.969451477,0.116877637,0.943544304,0.843966245,0.191561181,0.141012658,,0.099493671,0.113080169,0.382531646,0.123375527,0.155611814,0.159409283,1.652658228,Control,Memantine,C/S,c-CS-m
309_9,0.386310905,0.538428074,0.317720418,2.125725058,4.063950116,0.207221578,0.167778422,1.861513921,0.180684455,1.261890951,0.476653132,0.266966357,0.337006961,0.242604408,0.748259861,0.458961717,1.341792343,1.822070766,0.464472158,0.600638051,0.326566125,0.328886311,0.170388631,1.008845708,2.434599768,1.252030162,0.230423434,0.252610209,0.635585847,0.154147332,0.351218097,2.139211137,0.309164733,0.378480278,0.294518561,0.636890951,0.484918794,0.32337587,0.479988399,0.312064965,0.279292343,0.357598608,0.421693735,0.150120856,0.710808011,0.167472376,1.805248619,0.294457873,0.294112569,1.107907459,0.158839779,0.148653315,0.178522099,0.105145028,0.137776243,0.160393646,0.123964088,0.116799033,0.233857044,0.132596685,0.455973757,0.236015193,1.404178177,1.958736188,0.11386395,0.94690953,0.83218232,0.186377762,0.139589088,,0.105145028,0.105490331,0.435687155,0.125172652,0.152710635,0.158235497,1.834599448,Control,Memantine,C/S,c-CS-m
309_10,0.380827447,0.499293643,0.362462159,2.096266398,3.598587286,0.22764884,0.188092836,1.717860747,0.188092836,1.414328961,0.455499495,0.324117053,0.368314834,0.283753784,0.743491423,0.44419778,1.355398587,1.783249243,0.493037336,0.570534813,0.335418769,0.392129162,0.198385469,0.906155399,2.169929364,1.248234107,0.257719475,0.301513623,0.636730575,0.174369324,0.380423814,1.922906155,0.373965691,0.433501514,0.394349142,0.742078708,0.553178607,0.357214934,0.530978809,0.358627649,0.336024218,0.426034309,0.505751766,0.14006295,0.637927158,0.175584532,1.926596223,0.301821043,0.24977518,0.930980216,0.145458633,0.166254496,0.171088129,0.09330036,0.12443795,0.150629496,0.117580935,0.126573741,0.224145683,0.148156475,0.410971223,0.244829137,1.288669065,1.818907374,0.13995054,0.970323741,0.803394784,0.189523381,0.183678058,,0.09330036,0.116906475,0.414793165,0.146133094,0.188848921,0.192333633,1.516861511,Control,Memantine,C/S,c-CS-m
309_11,0.366511251,0.513277924,0.327792418,2.072572471,3.66105818,0.229474965,0.193796878,1.724508413,0.185282789,1.31867018,0.461179809,0.290289884,0.3794851,0.271234543,0.765659842,0.449422258,1.297993108,1.756132171,0.509831745,0.547536996,0.346036894,0.362659639,0.196229475,0.891952159,2.171903507,1.231096696,0.266166633,0.262720454,0.635313197,0.169673627,0.418812082,1.957834989,0.34684776,0.428137036,0.352118386,0.693087371,0.54672613,0.343807014,0.524021893,0.341374417,0.323535374,0.406649098,0.513277924,0.144505369,0.662097327,0.173292209,1.902901531,0.298377884,0.275416952,0.899017592,0.144391135,0.169979438,0.183801691,0.094356865,0.128169979,0.149988577,0.125999543,0.119716701,0.235549463,0.134110121,0.429403701,0.250628284,1.326707791,1.861549006,0.126799178,0.940370117,0.842472013,0.190769934,0.168037469,,0.094356865,0.131254284,0.385423806,0.151816313,0.184601325,0.193054604,1.613548092,Control,Memantine,C/S,c-CS-m
309_12,0.364153907,0.499411072,0.355123675,2.006870828,3.466627405,0.216332941,0.204358068,1.672555948,0.190223793,1.166077739,0.447192776,0.27718885,0.361405575,0.26442874,0.743031017,0.443855516,1.250098155,1.690812721,0.492343934,0.549862583,0.323125245,0.344719278,0.197879859,0.862583431,2.108755399,1.20691009,0.243423636,0.281311347,0.615822536,0.160581076,0.368080094,1.887711033,0.333922261,0.408912446,0.33451119,0.666274048,0.529053789,0.326266196,0.505300353,0.330977621,0.319199058,0.384766392,0.501570475,0.142299503,0.675065058,0.180151408,2.001656021,0.306837,0.287319612,0.967707594,0.159451147,0.15554767,0.17411876,0.098414952,0.135557133,0.160752307,0.127986752,0.115448308,0.236337828,0.141116631,0.455050863,0.249704282,1.30305181,1.913532056,0.124201561,0.911521173,0.836172226,0.194819021,0.166311805,,0.098414952,0.125266146,0.442394133,0.149988171,0.191861841,0.195528744,1.722971374,Control,Memantine,C/S,c-CS-m
309_13,0.364873351,0.482101737,0.312539251,1.946200544,3.349591794,0.230898053,0.188821436,1.508687461,0.171027842,1.353359849,0.471844254,0.272137325,0.340590329,0.256018422,0.723047938,0.417416789,1.226711325,1.737701486,0.461168097,0.494871258,0.384969646,0.339543647,0.199288256,0.869583421,1.925685577,1.149047519,0.273812016,0.256018422,0.612727653,0.16474775,0.366338706,1.749214988,0.322378062,0.426418254,0.37366548,0.690391459,0.528155746,0.353150513,0.520619636,0.32593678,0.332426209,0.466610844,0.464098807,0.12679558,0.589502762,0.167403315,1.904005525,0.279696133,0.244889503,0.944060773,0.137845304,0.176381215,0.175276243,0.097651934,0.123756906,0.15,0.117403315,0.126657459,0.223480663,0.14198895,0.395441989,0.277624309,1.251933702,1.760635359,0.160773481,0.997237569,0.80980663,0.203314917,0.200276243,,0.097651934,0.126933702,0.440331492,0.168370166,0.236878453,0.214088398,1.426933702,Control,Memantine,C/S,c-CS-m
309_14,0.381910612,0.485914001,0.31095107,1.958907011,3.349290405,0.225799619,0.188519381,1.50900233,0.179834781,1.219656852,0.463249312,0.284261809,0.36030502,0.262868036,0.755348443,0.41897903,1.197203982,1.686083457,0.485066723,0.524465156,0.343359458,0.347172209,0.214573184,0.814022453,1.956576996,1.137894514,0.239779708,0.25672527,0.579114594,0.164371955,0.367295065,1.770599449,0.339970345,0.427028172,0.370684177,0.68904893,0.524041517,0.337216691,0.4956577,0.329379369,0.321965685,0.403728024,0.462825673,0.134298973,0.611165799,0.170862045,1.972577697,0.283785684,0.254957109,0.929545774,0.136408381,0.172971453,0.174377725,0.094642104,0.142314724,0.154408663,0.117283083,0.123892561,0.24483195,0.136127127,0.415412741,0.252003938,1.288707636,1.792434257,0.131345802,0.980874701,0.832794262,0.190127971,0.196034313,,0.094642104,0.125017578,0.422162846,0.178737168,0.215581493,0.22528477,1.500070314,Control,Memantine,C/S,c-CS-m
unable to load file from base commit

10
index.html
Unescape View File

@ -138,15 +138,15 @@
<div class="col-md-2" style="width: 24.999999995%">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Interaction/Mode Selection</h2>
<h2 class="panel-title">Interaction Modes</h2>
</div>
<div class="panel-body">
<div id="resetAllFilters" style="margin-bottom: 20px">
<button class="btn btn-info active" onclick="setLayerProj();" ><i class="fas fa-mouse-pointer fa-lg" style="margin-right: 2px"></i>Points interaction</button>
<button class="btn btn-info" onclick="setLayerComp();" ><i class="far fa-object-group fa-lg" style="margin-right: 2px" ></i>Points lasso selection</button>
<button class="btn btn-info" onclick="setLayerSche();" ><i class="fas fa-draw-polygon fa-lg" style="margin-right: 2px"></i>Dimension correlation</button>
<button class="btn btn-info active" onclick="setLayerProj();" style="margin-left: -1px !important" ><i class="fas fa-mouse-pointer fa-lg" ></i>t-SNE Points Exploration</button>
<button class="btn btn-info" onclick="setLayerComp();" style="margin-left: -1.4px"><i class="far fa-object-group fa-lg" ></i>Group Selection</button>
<button class="btn btn-info" onclick="setLayerSche();" style="margin-left: -2px !important"><i class="fas fa-draw-polygon fa-lg" ></i>Dimension Correlation</button>
</div>
<button class="btn btn-info" onclick="setReset();" style="margin-left: 200px"><i class="fas fa-trash-alt fa-lg" style="margin-right: 10px"></i>Reset interactions</button>
<button class="btn btn-info" onclick="setReset();" style="margin-left: 225px"><i class="fas fa-trash-alt fa-lg" style="margin-right: 10px"></i>Reset Filters</button>
</div>
</div>
</div>

6
js/tsne_vis.js
Unescape View File

@ -2501,7 +2501,7 @@ if (points.length) { // If points exist (at least 1 point)
coun = coun + 1;
}
}
var FeatureWise = [];
for (var j=0; j<Object.values(dataFeatures[0]).length; j++){ // Get the features of the data set.
@ -2740,7 +2740,7 @@ if (points.length) { // If points exist (at least 1 point)
svg.append("g")
.attr("class", "legendLinear")
.attr("transform", "translate(10,15)");
.attr("transform", "translate(10,20)");
var legend = d3.legendColor()
.labelFormat(d3.format(",.0f"))
@ -2854,7 +2854,7 @@ if (points.length) { // If points exist (at least 1 point)
svg.append("g")
.attr("class", "legendSize")
.attr("transform", "translate(10,10)");
.attr("transform", "translate(15,20)");
var SizeRange2 = [];
SizeRange2.push(0);

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