t-viSNE: Interactive Assessment and Interpretation of t-SNE Projections https://doi.org/10.1109/TVCG.2020.2986996
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t-viSNE/index.html

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<html>
<head>
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<link rel="icon" href="data:;base64,iVBORw0KGgo=">
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<script src='./modules/three.js-r101/three.js'></script>
<script src='https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.5/lodash.js'></script>
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<!-- Importing D3 minified versions v3 and v5. -->
<script src='./modules/d3v3/d3.min.js'></script>
<script src='./modules/d3/d3.min.js'></script>
<!-- Importing additional modules such as starPlot, annotator, tip, legend, lasso, papaParse, and Jquery. -->
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<script src='./modules/d3-star/d3-starPlot.js'></script>
<script src='./modules/d3-annotations/d3-annotator.js'></script>
<script src="./modules/d3-tip/tip.js"></script>
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<script src="./modules/d3-lasso/lasso.js"></script>
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<script src="./modules/papa/papaparse.min.js"></script>
<script src="./modules/jquery/jquery.min.js"></script>
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<!-- Basic scripts that we execute. -->
<script src="./js/tsne.js"></script>
<script src="./js/data_form_handler.js"></script>
<script src="./modules/pca/pca.js"></script>
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<!-- CSS - Styling -->
<link rel="stylesheet" href="./css/style.css"/>
<link rel="stylesheet" href="./css/bootstrap.min.css"/>
<link rel="stylesheet" href="./css/dc.css"/>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/meyer-reset/2.0/reset.min.css">
<!-- Bootstrap -->
<script src="./modules/bootstrap/bootstrap.min.js"></script>
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</head>
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<body>
<div class="container-fluid">
<div class="row">
<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">t-SNE Overview</h2>
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</div>
<div class="row">
<div class="panel-body">
<div class="col-md-6">
<canvas id = "tSNEcanvas"></canvas>
</div>
<div class="col-md-2">
<div class="legend" id = "legend2"></div>
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</div>
</div>
</div>
<div id="control-panel">
<div class="param">
<label for="param-lim" >Points radius scaling factor</label>
<input id="param-lim" type="range" min="1" max="4" value="2", step="0.25" onchange="setReInitialize();">
<output for="param-lim" id="param-lim-value" >2</output>
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</div>
</div>
</div>
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</div>
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<div class="col-md-6">
<svg id="SvgAnnotator"></svg>
<svg id="modtSNEcanvas_svg"></svg>
<svg id="modtSNEcanvas_svg_Schema"></svg>
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<div id="modtSNEDiv">
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<canvas id = "modtSNEcanvas" ></canvas>
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</div>
</div>
<div class="col-md-1" style="width: 3.499999995%">
<svg id="legend1"></svg>
</div>
<div class="col-md-2" style="width: 21.499999995%">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Select Different Modes</h2>
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</div>
<div class="panel-body">
<div id="resetAllFilters" style="margin-bottom: 40px">
<button class="btn btn-info btn-block active" onclick="setLayerProj();">t-SNE points exploration</button>
<button class="btn btn-info btn-block" onclick="setLayerComp();">Points selection and data features comparison</button>
<button class="btn btn-info btn-block" onclick="setLayerSche();">Schema investigation</button>
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</div>
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<button class="btn btn-info btn-block" onclick="setReset();">Reset all filters</button>
<label style="margin-top: 15px">
<input id="controls" type="checkbox">
Hide annotations' controllers
</label>
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<label style="margin-top: 15px">
<input id="downloadDists" checked type="checkbox">
Distances cache (Save Exec)
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</label>
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</div>
</div>
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</div>
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</div>
<div class="row">
<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Shepard Heatmap</h2>
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</div>
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<div class="panel-body">
<div class="row">
<div class="col-md-6">
<svg id="sheparheat"></svg>
</div>
<div class="col-md-2">
<svg id="legend3"></svg>
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</div>
</div>
</div>
</div>
</div>
<div class="col-md-3 col-md-offset-6">
<svg id="correlation"></svg>
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</div>
</div>
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<div class="row">
<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">t-SNE Parameters</h2>
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</div>
<div class="panel-body">
<div id="control-panel" data-sr="enter left over 8s">
<div class="param">
<label id="data" for="param-dataset">Data sets</label>
<select id="param-dataset" name="param-dataset" onChange="changeDataset(this.value);">
<option value="winequality-red.csv">Red Wine - Quality</option>
<option value="iris.csv" selected>Iris</option>
<option value="mnist.csv" >Mnist</option>
<option value="Frogs_MFCCs_s.csv" >Frogs</option>
<option value="empty">Add New File</option>
</select>
<button type="button" class="button" id="FactRes" onclick="FactoryReset()">Factory reset</button>
</div>
<div class="param">
<label for="param-perplexity">Perplexity</label>
<input id="param-perplexity" type="range" min="2" max="100" value="30", step="1">
<output for="param-perplexity" id="param-perplexity-value">30</output>
</div>
<div class="param">
<label for="param-learningrate">Learning rate</label>
<input id="param-learningrate" type="range" min="1" max="300" value="10", step="1">
<output for="param-learningrate" id="param-learningrate-value">10</output>
</div>
<div class="param">
<label for="param-maxiter">Max iterations</label>
<input id="param-maxiter" type="range" min="10" max="1000" value="500", step="10">
<output for="param-maxiter" id="param-maxiter-value">500</output>
</div>
<div class="param">
<label for="param-distance">Distance metric</label>
<select id="param-distance" name="param-distance">
<option value="euclideanDist" selected>Euclidean distance</option>
<option value="jaccardDist">Jaccard dissimilarity</option>
</select>
<input id="file-input" type="file" name="name" style="display: none;" />
<button type="button" class="button" onclick='loadAnalysis();'>Load Execut.</button>
</div>
<div class="param">
<label for="param-transform">Data transform</label>
<select id="param-transform" name="param-transform">
<option value="noTrans" selected>No transform</option>
<option value="logTrans">Log10</option>
<option value="asinhTrans">Asinh</option>
<option value="binTrans">Binarize</option>
</select>
<button type="button" class="button" onclick="SaveAnalysis()">Save Execut.</button>
</div>
<p><div id="run-button"><button id="ExecuteBut" class="btn btn-primary btn-block" onclick="getData();" value="Execute new t-SNE analysis">Execute new t-SNE analysis</button></div></p>
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</div>
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</div>
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</div>
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</div>
<div class="col-md-3 col-md-offset-6">
<div id="starPlot"></div>
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</div>
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</div>
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<div class="row">
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<div class="col-md-3">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">Visual Mapping Parameters</h2>
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</div>
<div class="row">
<div class="panel-body">
<div class="col-md-12">
<div id="ThumbNailsList">
<label for="male">Neighborhood Preservation</label>
<select id="param-neighborHood" name ="param-neighborHood" onchange="setReInitialize();">
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<option selected="selected" value="color">Color</option>
<option value="size">Size</option>
</select>
<output for="param-neighborHood" id="param-neighborHood-value"></output>
<label for="male">Final Cost (Kullback-Leibler)</label>
<label id="selectionLabel" style="margin-top:4px">Size</label>
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<div id="param-correlation">
<div class="param">
<label for="param-corr">Correlation threshold</label>
<input id="param-corr" type="range" min="0" max="750" value="150", step="25" onchange="CalculateCorrel();">
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<output for="param-corr" id="param-corr-value">150</output>
</div>
Annotation: <textarea type="text" id="comment" name="textforAnnotator" style="margin-top:4px" placeholder="Please, provide your comment."></textarea>
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</div>
<div id="commBtn">
<div class="param" style="margin-top:4px">
<div id="toggleAnnotator"><button class="btn btn-default btn-block" onclick="setAnnotator();">Addition of a new comment</button></div>
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</div>
<div class="param" style="margin-top:4px">
<div id="continue"><button class="btn btn-default btn-block active" onclick="setContinue();">Continuation of the analysis</button></div>
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</div>
</div>
</div>
</div>
</div>
</div>
</div>
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</div>
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<div class = col-md-6>
<svg id="knnBarChart"></svg>
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</div>
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<div class="col-md-3" id="extra-information" style="width: 24.6vw">
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<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title">t-SNE and Data Set's Additional Information</h2>
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</div>
<div class="panel-body">
<div id="cost"></div>
<br>
<div id="datasetDetails"></div>
</div>
</div>
<div class="panel panel-default" id="kNNInfo">
<div class="panel-heading">
<h2 class="panel-title">k Nearest Neighborhood Cluster Purity Preservation</h2>
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</div>
<div class="panel-body">
<div id="kNNDetails"></div>
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</div>
</div>
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</div>
</div>
</div>
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<script>
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$('#param-perplexity').bind('input', function () { $('#param-perplexity-value').text($('#param-perplexity').val()); });
$('#param-earlyexag').bind('input', function () { $('#param-earlyexag-value').text($('#param-earlyexag').val()); });
$('#param-learningrate').bind('input', function () { $('#param-learningrate-value').text($('#param-learningrate').val()); });
$('#param-maxiter').bind('input', function () { $('#param-maxiter-value').text($('#param-maxiter').val()); });
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<!-- Load the core visualization script. -->
<script src="./js/tsne_vis.js"></script>
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</body>
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</html>