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fixed data space

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master
Angelos Chatzimparmpas 5 years ago
parent ba2b38fe8b
commit 8f1ca2a081
10 changed files with 3780 additions and 2147 deletions
Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL
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  1. BIN
      __pycache__/run.cpython-37.pyc
  2. 5597
      frontend/package-lock.json
  3. 118
      frontend/package.json
  4. 4
      frontend/src/components/BalancePredictions.vue
  5. 110
      frontend/src/components/DataSpace.vue
  6. 4
      frontend/src/components/Main.vue
  7. 2
      frontend/src/components/PerMetricBarChart.vue
  8. 50
      frontend/src/components/PredictionsSpace.vue
  9. 1
      frontend/src/components/ScatterPlot.vue
  10. 3
      run.py

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118
frontend/package.json
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@ -11,33 +11,33 @@
"start": "npm run dev"
},
"dependencies": {
"@babel/core": "^7.7.2",
"@babel/runtime": "^7.7.2",
"@fortawesome/fontawesome-free": "^5.11.2",
"@fortawesome/fontawesome-svg-core": "^1.2.25",
"@fortawesome/free-solid-svg-icons": "^5.11.2",
"@fortawesome/vue-fontawesome": "^0.1.8",
"@babel/core": "^7.8.3",
"@babel/runtime": "^7.8.3",
"@fortawesome/fontawesome-free": "^5.12.0",
"@fortawesome/fontawesome-svg-core": "^1.2.26",
"@fortawesome/free-solid-svg-icons": "^5.12.0",
"@fortawesome/vue-fontawesome": "^0.1.9",
"@statnett/vue-plotly": "^0.3.2",
"@types/d3-drag": "^1.2.3",
"@types/node": "^12.12.7",
"ajv": "^6.10.2",
"@types/node": "^13.1.8",
"ajv": "^6.11.0",
"audit": "0.0.6",
"axios": "^0.19.0",
"axios": "^0.19.1",
"axios-progress-bar": "^1.2.0",
"babel-preset-vue": "^2.0.2",
"blob": "0.0.5",
"bootstrap": "^4.3.1",
"bootstrap": "^4.4.1",
"bootstrap-toggle": "^2.2.2",
"bootstrap-vue": "^2.0.4",
"bootstrap-vue": "^2.2.2",
"circlepack-chart": "^1.3.0",
"clean-webpack-plugin": "^3.0.0",
"colorbrewer": "^1.3.0",
"d3": "^5.12.0",
"d3-drag": "^1.2.4",
"d3": "^5.15.0",
"d3-drag": "^1.2.5",
"d3-heatmap": "^1.2.1",
"d3-lasso": "0.0.5",
"d3-loom": "^1.0.2",
"d3-selection": "^1.4.0",
"d3-selection": "^1.4.1",
"d3-selection-multi": "^1.0.1",
"d3_exploding_boxplot": "^0.2.1",
"file-saver": "^2.0.2",
@ -46,17 +46,17 @@
"fs": "0.0.2",
"fs-es6": "0.0.2",
"ify-loader": "^1.1.0",
"interactjs": "^1.6.3",
"interactjs": "^1.7.3",
"jquery": "^3.4.1",
"mdbvue": "^6.0.0",
"mini-css-extract-plugin": "^0.8.0",
"npm-check-updates": "^3.2.1",
"papaparse": "^5.1.0",
"mdbvue": "^6.2.0",
"mini-css-extract-plugin": "^0.9.0",
"npm-check-updates": "^4.0.1",
"papaparse": "^5.1.1",
"parcoord-es": "^2.2.10",
"plotly.js": "^1.51.1",
"plotly.js": "^1.52.1",
"popper.js": "^1.16.0",
"react": "^16.11.0",
"react-dom": "^16.11.0",
"react": "^16.12.0",
"react-dom": "^16.12.0",
"stardust-allofw": "^0.1.1",
"stardust-core": "^0.2.4",
"stardust-webgl": "^0.2.4",
@ -64,76 +64,76 @@
"toposort": "^2.0.2",
"transform-loader": "^0.2.4",
"update": "^0.7.4",
"vega": "^5.7.3",
"vue": "^2.6.10",
"vega": "^5.9.1",
"vue": "^2.6.11",
"vue-bootstrap-slider": "^2.1.8",
"vue-papa-parse": "^1.3.0",
"vue-plotly": "^1.0.1",
"vue-router": "^3.1.3",
"vue-slider-component": "^3.0.42",
"vue-router": "^3.1.5",
"vue-slider-component": "^3.1.0",
"vue2-simplert-plugin": "^0.5.3",
"webpack-cli": "^3.3.10",
"webpack-require": "0.0.16"
},
"devDependencies": {
"@babel/plugin-proposal-class-properties": "^7.7.0",
"@babel/plugin-proposal-decorators": "^7.7.0",
"@babel/plugin-proposal-export-namespace-from": "^7.5.2",
"@babel/plugin-proposal-function-sent": "^7.7.0",
"@babel/plugin-proposal-json-strings": "^7.2.0",
"@babel/plugin-proposal-numeric-separator": "^7.2.0",
"@babel/plugin-proposal-throw-expressions": "^7.2.0",
"@babel/plugin-syntax-dynamic-import": "^7.2.0",
"@babel/plugin-syntax-import-meta": "^7.2.0",
"@babel/plugin-syntax-jsx": "^7.2.0",
"@babel/plugin-transform-runtime": "^7.6.2",
"@babel/preset-env": "^7.7.1",
"autoprefixer": "^9.7.1",
"@babel/plugin-proposal-class-properties": "^7.8.3",
"@babel/plugin-proposal-decorators": "^7.8.3",
"@babel/plugin-proposal-export-namespace-from": "^7.8.3",
"@babel/plugin-proposal-function-sent": "^7.8.3",
"@babel/plugin-proposal-json-strings": "^7.8.3",
"@babel/plugin-proposal-numeric-separator": "^7.8.3",
"@babel/plugin-proposal-throw-expressions": "^7.8.3",
"@babel/plugin-syntax-dynamic-import": "^7.8.3",
"@babel/plugin-syntax-import-meta": "^7.8.3",
"@babel/plugin-syntax-jsx": "^7.8.3",
"@babel/plugin-transform-runtime": "^7.8.3",
"@babel/preset-env": "^7.8.3",
"autoprefixer": "^9.7.4",
"babel-eslint": "^10.0.3",
"babel-helper-vue-jsx-merge-props": "^2.0.3",
"babel-loader": "^8.0.6",
"babel-plugin-transform-vue-jsx": "^3.7.0",
"chalk": "^3.0.0",
"copy-webpack-plugin": "^5.0.5",
"css-loader": "^3.2.0",
"eslint": "^6.6.0",
"copy-webpack-plugin": "^5.1.1",
"css-loader": "^3.4.2",
"eslint": "^6.8.0",
"eslint-config-standard": "^14.1.0",
"eslint-friendly-formatter": "^4.0.1",
"eslint-loader": "^3.0.2",
"eslint-plugin-import": "^2.18.2",
"eslint-plugin-node": "^10.0.0",
"eslint-loader": "^3.0.3",
"eslint-plugin-import": "^2.20.0",
"eslint-plugin-node": "^11.0.0",
"eslint-plugin-promise": "^4.2.1",
"eslint-plugin-standard": "^4.0.1",
"eslint-plugin-vue": "^6.0.0",
"eslint-plugin-vue": "^6.1.2",
"extract-text-webpack-plugin": "^3.0.2",
"file-loader": "^4.2.0",
"file-loader": "^5.0.2",
"friendly-errors-webpack-plugin": "^1.7.0",
"html-webpack-plugin": "^3.2.0",
"node-notifier": "^6.0.0",
"optimize-css-assets-webpack-plugin": "^5.0.3",
"ora": "^4.0.2",
"ora": "^4.0.3",
"portfinder": "^1.0.25",
"postcss-import": "^12.0.1",
"postcss-loader": "^3.0.0",
"postcss-url": "^8.0.0",
"rimraf": "^3.0.0",
"sass": "^1.23.3",
"sass-loader": "^8.0.0",
"semver": "^6.3.0",
"sass": "^1.25.0",
"sass-loader": "^8.0.2",
"semver": "^7.1.1",
"shelljs": "^0.8.3",
"uglifyjs-webpack-plugin": "^2.2.0",
"url-loader": "^2.2.0",
"vue-class-component": "^7.1.0",
"vue-cli-plugin-vuetify": "^2.0.2",
"vue-loader": "^15.7.2",
"url-loader": "^3.0.0",
"vue-class-component": "^7.2.2",
"vue-cli-plugin-vuetify": "^2.0.3",
"vue-loader": "^15.8.3",
"vue-property-decorator": "^8.3.0",
"vue-style-loader": "^4.1.2",
"vue-template-compiler": "^2.6.10",
"vue-template-compiler": "^2.6.11",
"vue2-simplert": "^1.0.0",
"vuetify-loader": "^1.3.0",
"webpack": "^4.41.2",
"vuetify-loader": "^1.4.3",
"webpack": "^4.41.5",
"webpack-bundle-analyzer": "^3.6.0",
"webpack-dev-server": "^3.9.0",
"webpack-dev-server": "^3.10.1",
"webpack-merge": "^4.2.2"
},
"browserslist": [

4
frontend/src/components/BalancePredictions.vue
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@ -93,7 +93,7 @@
svg.append("path")
.attr("class", "mypath")
.datum(density2)
.attr("fill", "#00bbbb")
.attr("fill", "#D3D3D3")
.attr("opacity", "1")
.attr("stroke", "#000")
.attr("stroke-width", 1)
@ -111,7 +111,7 @@
// Handmade legend
var heightforText = 175
svg.append("circle").attr("cx",80).attr("cy",heightforText).attr("r", 6).style("fill", "#000")
svg.append("circle").attr("cx",300).attr("cy",heightforText).attr("r", 6).style("fill", "#00bbbb")
svg.append("circle").attr("cx",300).attr("cy",heightforText).attr("r", 6).style("fill", "#D3D3D3")
svg.append("text").attr("x", 100).attr("y", heightforText).text("Entire distribution").style("font-size", "15px").attr("alignment-baseline","middle")
svg.append("text").attr("x", 320).attr("y", heightforText).text("Selected points").style("font-size", "15px").attr("alignment-baseline","middle")

110
frontend/src/components/DataSpace.vue
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@ -10,68 +10,92 @@ export default {
name: 'DataSpace',
data () {
return {
CollectionData: '',
DataSpace: '',
WH: []
dataPoints: '',
highlightedPoints: '',
responsiveWidthHeight: [],
colorsValues: ['#00bbbb','#b15928','#ff7f00']
}
},
methods: {
ScatterPlotDataView () {
scatterPlotDataView () {
// responsive visualization
let width = this.responsiveWidthHeight[0]*3
let height = this.responsiveWidthHeight[1]*2.1
var target_names = JSON.parse(this.DataSpace[4])
const XandYCoordinates = JSON.parse(this.DataSpace[7])
const DataSet = JSON.parse(this.DataSpace[14])
const DataSetY = JSON.parse(this.DataSpace[15])
var target_names = JSON.parse(this.dataPoints[4])
const XandYCoordinates = JSON.parse(this.dataPoints[7])
const DataSet = JSON.parse(this.dataPoints[14])
const DataSetY = JSON.parse(this.dataPoints[15])
const originalDataLabels = JSON.parse(this.dataPoints[16])
var DataSetParse = JSON.parse(DataSet)
let intData = []
if (this.highlightedPoints.length > 0){
let removedPuncData = this.highlightedPoints.map(function(x){return x.replace(';', '');})
intData = removedPuncData.map(Number)
} else {
intData = []
}
var result = XandYCoordinates.reduce(function(r, a) {
var id = 0
a.forEach(function(s, i) {
var key = i === 0 ? 'Xax' : 'Yax';
var key = i === 0 ? 'Xax' : 'Yax'
r[key] || (r[key] = []); // if key not found on result object, add the key with empty array as the value
r[key] || (r[key] = []) // if key not found on result object, add the key with empty array as the value
r[key].push(s)
r[key].push(s);
})
return r;
return r
}, {})
var dataPointInfo = []
for (let i = 0; i < XandYCoordinates.length; i++) {
dataPointInfo[i] = 'Data Point ID: ' + i + '; Details: ' + JSON.stringify(DataSetParse[i])
}
var IDs = [];
var colors = ['#a6cee3','#1f78b4','#b2df8a','#33a02c','#fb9a99','#e31a1c','#fdbf6f','#ff7f00','#cab2d6','#6a3d9a']
for (let i = 0; i < result.Xax.length; i++) {
IDs.push(i)
}
result.ID = IDs
var traces = []
var countPrev = 0
var count = 0
for (let i = 0; i < target_names.length; i++) {
count = 0
for (let j = 0; j < DataSetY.length; j++) {
if (i == DataSetY[j]) {
count = count + 1
}
const aux_X = result.Xax.filter((item, index) => originalDataLabels[index] == target_names[i]);
const aux_Y = result.Yax.filter((item, index) => originalDataLabels[index] == target_names[i]);
const aux_ID = result.ID.filter((item, index) => originalDataLabels[index] == target_names[i]);
var Text = aux_ID.map((item, index) => {
let popup = 'Data Point ID: ' + item + '; Details: ' + JSON.stringify(DataSetParse[item])
return popup;
});
var Opacity = aux_ID.map((item, index) => {
let opac
if (intData.length == 0) {
opac = 1
} else if (intData.indexOf(item) > -1) {
opac = 1
} else {
opac = 0.5
}
return opac;
});
traces.push({
x: result.Xax.slice(countPrev,count+countPrev),
y: result.Yax.slice(countPrev,count+countPrev),
x: aux_X,
y: aux_Y,
mode: 'markers',
name: target_names[i],
marker: {
color: colors[i]
},
marker: { color: this.colorsValues[i], line: { color: 'rgb(0, 0, 0)', width: 2 }, opacity: Opacity },
hovertemplate:
"<b>%{text}</b><br><br>" +
"<extra></extra>",
text: dataPointInfo.slice(countPrev,count+countPrev),
text: Text,
})
countPrev = count + countPrev
}
var width = this.WH[0]*3 // interactive visualization
var height = this.WH[1]*2.1 // interactive visualization
const layout = {
title: 'Data Space Projection (t-SNE)',
xaxis: {
@ -93,15 +117,21 @@ export default {
}
},
mounted() {
EventBus.$on('emittedEventCallingDataPlot', data => {
this.CollectionData = data})
// initialize the first data space projection based on the data set
EventBus.$on('emittedEventCallingDataSpacePlotView', data => {
this.DataSpace = data})
EventBus.$on('emittedEventCallingDataSpacePlotView', this.ScatterPlotDataView)
this.dataPoints = data})
EventBus.$on('emittedEventCallingDataSpacePlotView', this.scatterPlotDataView)
// linking based on predictions space brushing
EventBus.$on('updateDataSpaceHighlighting', data => {
this.highlightedPoints = data})
EventBus.$on('updateDataSpaceHighlighting', this.scatterPlotDataView)
// make the view responsive to window changes
EventBus.$on('Responsive', data => {
this.WH = data})
this.responsiveWidthHeight = data})
EventBus.$on('ResponsiveandChange', data => {
this.WH = data})
this.responsiveWidthHeight = data})
}
}
</script>

4
frontend/src/components/Main.vue
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@ -380,8 +380,10 @@ export default Vue.extend({
})
},
SendSelectedDataPointsToServer () {
// set a path from which the server will receive the seleceted predictions points
const path = `http://127.0.0.1:5000/data/ServerRequestDataPoint`
// brushing and linking between predictions space and data space
EventBus.$emit('updateDataSpaceHighlighting', this.DataPointsSel)
const postData = {
DataPointsSel: this.DataPointsSel

2
frontend/src/components/PerMetricBarChart.vue
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@ -44,7 +44,7 @@ export default {
name: 'Selected points',
type: 'bar',
marker: {
color: 'rgb(0, 187, 187)'
color: 'rgb(211,211,211)'
}
};
var data = [trace1, trace2];

50
frontend/src/components/PredictionsSpace.vue
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@ -12,15 +12,21 @@ export default {
return {
PredictionsData: '',
UpdatedData: '',
WH: []
colorsValues: ['#00bbbb','#b15928','#ff7f00'],
responsiveWidthHeight: []
}
},
methods: {
ScatterPlotDataView () {
// responsive visualization
var width = this.responsiveWidthHeight[0]*3
var height = this.responsiveWidthHeight[1]*1.48
var target_names = JSON.parse(this.PredictionsData[4])
const XandYCoordinates = JSON.parse(this.PredictionsData[8])
const DataSet = JSON.parse(this.PredictionsData[14])
const DataSetY = JSON.parse(this.PredictionsData[15])
const originalDataLabels = JSON.parse(this.PredictionsData[16])
var DataSetParse = JSON.parse(DataSet)
var result = XandYCoordinates.reduce(function(r, a) {
@ -34,43 +40,39 @@ export default {
return r;
}, {})
var dataPointInfo = []
for (let i = 0; i < XandYCoordinates.length; i++) {
dataPointInfo[i] = 'Data Point ID: ' + i + '; Details: ' + JSON.stringify(DataSetParse[i])
}
var IDs = [];
var colors = ['#a6cee3','#1f78b4','#b2df8a','#33a02c','#fb9a99','#e31a1c','#fdbf6f','#ff7f00','#cab2d6','#6a3d9a']
for (let i = 0; i < result.Xax.length; i++) {
IDs.push(i)
}
result.ID = IDs
var traces = []
var countPrev = 0
var count = 0
for (let i = 0; i < target_names.length; i++) {
count = 0
for (let j = 0; j < DataSetY.length; j++) {
if (i == DataSetY[j]) {
count = count + 1
}
}
const aux_X = result.Xax.filter((item, index) => originalDataLabels[index] == target_names[i]);
const aux_Y = result.Yax.filter((item, index) => originalDataLabels[index] == target_names[i]);
const aux_ID = result.ID.filter((item, index) => originalDataLabels[index] == target_names[i]);
var Text = aux_ID.map((item, index) => {
let popup = 'Data Point ID: ' + item + '; Details: ' + JSON.stringify(DataSetParse[item])
return popup;
});
traces.push({
x: result.Xax.slice(countPrev,count+countPrev),
y: result.Yax.slice(countPrev,count+countPrev),
x: aux_X,
y: aux_Y,
mode: 'markers',
name: target_names[i],
marker: {
color: colors[i]
},
marker: { color: this.colorsValues[i], line: { color: 'rgb(0, 0, 0)', width: 2 }, opacity: 1 },
hovertemplate:
"<b>%{text}</b><br><br>" +
"<extra></extra>",
text: dataPointInfo.slice(countPrev,count+countPrev),
text: Text,
})
countPrev = count + countPrev
}
var width = this.WH[0]*3 // interactive visualization
var height = this.WH[1]*1.48 // interactive visualization
const layout = {
title: 'Predictions Space Projection (t-SNE)',
xaxis: {

1
frontend/src/components/ScatterPlot.vue
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@ -125,6 +125,7 @@ export default {
"<extra></extra>",
text: classifiersInfoProcessing,
marker: {
line: { color: 'rgb(0, 0, 0)', width: 2 },
color: colorsforScatterPlot,
size: 12,
colorscale: 'Viridis',

3
run.py
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@ -229,6 +229,7 @@ def DataSetSelection():
del dictionary['InstanceID']
del dictionary[target]
global AllTargets
AllTargets = [o[target] for o in DataResultsRaw]
AllTargetsFloatValues = []
@ -765,6 +766,7 @@ def InitializeEnsemble():
def ReturnResults(ModelSpaceMDS,ModelSpaceTSNE,DataSpaceList,PredictionSpaceList):
global Results
global AllTargets
Results = []
parametersGen = PreprocessingParam()
@ -800,6 +802,7 @@ def ReturnResults(ModelSpaceMDS,ModelSpaceTSNE,DataSpaceList,PredictionSpaceList
Results.append(json.dumps(ModelsIDs)) # Position: 13
Results.append(json.dumps(XDataJSONEntireSet)) # Position: 14
Results.append(json.dumps(yData)) # Position: 15
Results.append(json.dumps(AllTargets)) # Position: 16
return Results

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