diff --git a/__pycache__/run.cpython-37.pyc b/__pycache__/run.cpython-37.pyc new file mode 100644 index 0000000..be9dd0b Binary files /dev/null and b/__pycache__/run.cpython-37.pyc differ diff --git a/__pycache__/run.cpython-38.pyc b/__pycache__/run.cpython-38.pyc new file mode 100644 index 0000000..d869d57 Binary files /dev/null and b/__pycache__/run.cpython-38.pyc differ diff --git a/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/metadata.json b/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/metadata.json new file mode 100644 index 0000000..525d7f9 --- /dev/null +++ b/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/metadata.json @@ -0,0 +1 @@ +{"duration": 5.343116044998169, "input_args": {"RemainingIds": "['KNN0', 'KNN1', 'KNN2', 'KNN3', 'KNN4', 'KNN5', 'KNN6', 'KNN7', 'KNN8', 'KNN9', 'KNN10', 'KNN11', 'KNN12', 'KNN13', 'KNN14', 'KNN15', 'KNN16', 'KNN17', 'KNN18', 'KNN19', 'KNN20', 'KNN21', 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'GradB444', 'GradB445', 'GradB446', 'GradB447', 'GradB448', 'GradB449', 'GradB450', 'GradB451', 'GradB452', 'GradB453', 'GradB454', 'GradB455', 'GradB456', 'GradB457', 'GradB458', 'GradB459', 'GradB460', 'GradB461', 'GradB462', 'GradB463', 'GradB464', 'GradB465', 'GradB466', 'GradB467', 'GradB468', 'GradB469', 'GradB470', 'GradB471', 'GradB472', 'GradB473', 'GradB474', 'GradB475', 'GradB476', 'GradB477', 'GradB478', 'GradB479', 'GradB480', 'GradB481', 'GradB482', 'GradB483', 'GradB484', 'GradB485', 'GradB486', 'GradB487', 'GradB488', 'GradB489', 'GradB490', 'GradB491', 'GradB492', 'GradB493', 'GradB494', 'GradB495', 'GradB496', 'GradB497', 'GradB498', 'GradB499']", "setMaxLoopValue": "[0, 0, 0, 0, 0, 0, 5, 5, 5, 5, 5, 0, 5, 5, 5, 5, 5, 0]"}} \ No newline at end of file diff --git a/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/output.pkl b/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/output.pkl new file mode 100644 index 0000000..76b1d12 Binary files /dev/null and b/cachedir/joblib/run/InitializeFirstStageCM/4d92e132aff76d1fab2a2901e200dcca/output.pkl differ diff --git a/cachedir/joblib/run/InitializeFirstStageCM/func_code.py b/cachedir/joblib/run/InitializeFirstStageCM/func_code.py new file mode 100644 index 0000000..90dbd0e --- /dev/null +++ b/cachedir/joblib/run/InitializeFirstStageCM/func_code.py @@ -0,0 +1,572 @@ +# first line: 1312 +@memory.cache +def InitializeFirstStageCM (RemainingIds, setMaxLoopValue): + random.seed(RANDOM_SEED) + + global XData + global yData + global addKNN + global addLR + global addMLP + global addRF + global addGradB + global countAllModels + + # loop through the algorithms + global allParametersPerfCrossMutr + global HistoryPreservation + + global randomSearchVar + greater = randomSearchVar*5 + + KNNIDs = list(filter(lambda k: 'KNN' in k, RemainingIds)) + LRIDs = list(filter(lambda k: 'LR' in k, RemainingIds)) + MLPIDs = list(filter(lambda k: 'MLP' in k, RemainingIds)) + RFIDs = list(filter(lambda k: 'RF' in k, RemainingIds)) + GradBIDs = list(filter(lambda k: 'GradB' in k, RemainingIds)) + + countKNN = 0 + countLR = 0 + countMLP = 0 + countRF = 0 + countGradB = 0 + paramAllAlgs = PreprocessingParam() + + KNNIntIndex = [] + LRIntIndex = [] + MLPIntIndex = [] + RFIntIndex = [] + GradBIntIndex = [] + + localCrossMutr = [] + allParametersPerfCrossMutrKNNC = [] + + while countKNN < setMaxLoopValue[16]: + for dr in KNNIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + KNNIntIndex.append(int(re.findall('\d+', dr)[0])-addKNN) + else: + KNNIntIndex.append(int(re.findall('\d+', dr)[0])) + KNNPickPair = random.sample(KNNIntIndex,2) + pairDF = paramAllAlgs.iloc[KNNPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + randomZeroOne = random.randint(0, 1) + valuePerColumn = pairDF[column].iloc[randomZeroOne] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['algorithm'] == crossoverDF['algorithm'].iloc[0]) & (paramAllAlgs['metric'] == crossoverDF['metric'].iloc[0]) & (paramAllAlgs['n_neighbors'] == crossoverDF['n_neighbors'].iloc[0]) & (paramAllAlgs['weights'] == crossoverDF['weights'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = KNeighborsClassifier() + params = {'n_neighbors': [crossoverDF['n_neighbors'].iloc[0]], 'metric': [crossoverDF['metric'].iloc[0]], 'algorithm': [crossoverDF['algorithm'].iloc[0]], 'weights': [crossoverDF['weights'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countKNN + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'KNN_C', AlgorithmsIDsEnd) + countKNN += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[16] + + for loop in range(setMaxLoopValue[16] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrKNNC.append(localCrossMutr[0]) + allParametersPerfCrossMutrKNNC.append(localCrossMutr[1]) + allParametersPerfCrossMutrKNNC.append(localCrossMutr[2]) + allParametersPerfCrossMutrKNNC.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrKNNC + + countKNN = 0 + KNNIntIndex = [] + localCrossMutr.clear() + allParametersPerfCrossMutrKNNM = [] + + while countKNN < setMaxLoopValue[10]: + for dr in KNNIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + KNNIntIndex.append(int(re.findall('\d+', dr)[0])-addKNN) + else: + KNNIntIndex.append(int(re.findall('\d+', dr)[0])) + KNNPickPair = random.sample(KNNIntIndex,1) + + pairDF = paramAllAlgs.iloc[KNNPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + if (column == 'n_neighbors'): + randomNumber = random.randint(101, math.floor(((len(yData)/crossValidation)*(crossValidation-1)))-1) + listData.append(randomNumber) + crossoverDF[column] = listData + else: + valuePerColumn = pairDF[column].iloc[0] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['algorithm'] == crossoverDF['algorithm'].iloc[0]) & (paramAllAlgs['metric'] == crossoverDF['metric'].iloc[0]) & (paramAllAlgs['n_neighbors'] == crossoverDF['n_neighbors'].iloc[0]) & (paramAllAlgs['weights'] == crossoverDF['weights'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = KNeighborsClassifier() + params = {'n_neighbors': [crossoverDF['n_neighbors'].iloc[0]], 'metric': [crossoverDF['metric'].iloc[0]], 'algorithm': [crossoverDF['algorithm'].iloc[0]], 'weights': [crossoverDF['weights'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countKNN + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'KNN_M', AlgorithmsIDsEnd) + countKNN += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[10] + + for loop in range(setMaxLoopValue[10] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrKNNM.append(localCrossMutr[0]) + allParametersPerfCrossMutrKNNM.append(localCrossMutr[1]) + allParametersPerfCrossMutrKNNM.append(localCrossMutr[2]) + allParametersPerfCrossMutrKNNM.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrKNNM + + localCrossMutr.clear() + allParametersPerfCrossMutrLRC = [] + + while countLR < setMaxLoopValue[15]: + for dr in LRIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + LRIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar)) + else: + LRIntIndex.append(int(re.findall('\d+', dr)[0])) + LRPickPair = random.sample(LRIntIndex,2) + pairDF = paramAllAlgs.iloc[LRPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + randomZeroOne = random.randint(0, 1) + valuePerColumn = pairDF[column].iloc[randomZeroOne] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['C'] == crossoverDF['C'].iloc[0]) & (paramAllAlgs['max_iter'] == crossoverDF['max_iter'].iloc[0]) & (paramAllAlgs['solver'] == crossoverDF['solver'].iloc[0]) & (paramAllAlgs['penalty'] == crossoverDF['penalty'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = LogisticRegression(random_state=RANDOM_SEED) + params = {'C': [crossoverDF['C'].iloc[0]], 'max_iter': [crossoverDF['max_iter'].iloc[0]], 'solver': [crossoverDF['solver'].iloc[0]], 'penalty': [crossoverDF['penalty'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countLR + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'LR_C', AlgorithmsIDsEnd) + countLR += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[15] + + for loop in range(setMaxLoopValue[15] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrLRC.append(localCrossMutr[0]) + allParametersPerfCrossMutrLRC.append(localCrossMutr[1]) + allParametersPerfCrossMutrLRC.append(localCrossMutr[2]) + allParametersPerfCrossMutrLRC.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrLRC + + countLR = 0 + LRIntIndex = [] + localCrossMutr.clear() + allParametersPerfCrossMutrLRM = [] + + while countLR < setMaxLoopValue[9]: + for dr in LRIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + LRIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar)) + else: + LRIntIndex.append(int(re.findall('\d+', dr)[0])) + LRPickPair = random.sample(LRIntIndex,1) + + pairDF = paramAllAlgs.iloc[LRPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + if (column == 'C'): + randomNumber = random.randint(101, 1000) + listData.append(randomNumber) + crossoverDF[column] = listData + else: + valuePerColumn = pairDF[column].iloc[0] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['C'] == crossoverDF['C'].iloc[0]) & (paramAllAlgs['max_iter'] == crossoverDF['max_iter'].iloc[0]) & (paramAllAlgs['solver'] == crossoverDF['solver'].iloc[0]) & (paramAllAlgs['penalty'] == crossoverDF['penalty'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = LogisticRegression(random_state=RANDOM_SEED) + params = {'C': [crossoverDF['C'].iloc[0]], 'max_iter': [crossoverDF['max_iter'].iloc[0]], 'solver': [crossoverDF['solver'].iloc[0]], 'penalty': [crossoverDF['penalty'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countLR + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'LR_M', AlgorithmsIDsEnd) + countLR += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[9] + + for loop in range(setMaxLoopValue[9] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrLRM.append(localCrossMutr[0]) + allParametersPerfCrossMutrLRM.append(localCrossMutr[1]) + allParametersPerfCrossMutrLRM.append(localCrossMutr[2]) + allParametersPerfCrossMutrLRM.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrLRM + + localCrossMutr.clear() + allParametersPerfCrossMutrMLPC = [] + + while countMLP < setMaxLoopValue[14]: + for dr in MLPIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + MLPIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*2)) + else: + MLPIntIndex.append(int(re.findall('\d+', dr)[0])) + MLPPickPair = random.sample(MLPIntIndex,2) + + pairDF = paramAllAlgs.iloc[MLPPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + randomZeroOne = random.randint(0, 1) + valuePerColumn = pairDF[column].iloc[randomZeroOne] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['hidden_layer_sizes'] == crossoverDF['hidden_layer_sizes'].iloc[0]) & (paramAllAlgs['alpha'] == crossoverDF['alpha'].iloc[0]) & (paramAllAlgs['tol'] == crossoverDF['tol'].iloc[0]) & (paramAllAlgs['max_iter'] == crossoverDF['max_iter'].iloc[0]) & (paramAllAlgs['activation'] == crossoverDF['activation'].iloc[0]) & (paramAllAlgs['solver'] == crossoverDF['solver'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = MLPClassifier(random_state=RANDOM_SEED) + params = {'hidden_layer_sizes': [crossoverDF['hidden_layer_sizes'].iloc[0]], 'alpha': [crossoverDF['alpha'].iloc[0]], 'tol': [crossoverDF['tol'].iloc[0]], 'max_iter': [crossoverDF['max_iter'].iloc[0]], 'activation': [crossoverDF['activation'].iloc[0]], 'solver': [crossoverDF['solver'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countMLP + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'MLP_C', AlgorithmsIDsEnd) + countMLP += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[14] + + for loop in range(setMaxLoopValue[14] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrMLPC.append(localCrossMutr[0]) + allParametersPerfCrossMutrMLPC.append(localCrossMutr[1]) + allParametersPerfCrossMutrMLPC.append(localCrossMutr[2]) + allParametersPerfCrossMutrMLPC.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrMLPC + + countMLP = 0 + MLPIntIndex = [] + localCrossMutr.clear() + allParametersPerfCrossMutrMLPM = [] + + while countMLP < setMaxLoopValue[8]: + for dr in MLPIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + MLPIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*2)) + else: + MLPIntIndex.append(int(re.findall('\d+', dr)[0])) + MLPPickPair = random.sample(MLPIntIndex,1) + + pairDF = paramAllAlgs.iloc[MLPPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + if (column == 'hidden_layer_sizes'): + randomNumber = (random.randint(10,60), random.randint(4,10)) + listData.append(randomNumber) + crossoverDF[column] = listData + else: + valuePerColumn = pairDF[column].iloc[0] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['hidden_layer_sizes'] == crossoverDF['hidden_layer_sizes'].iloc[0]) & (paramAllAlgs['alpha'] == crossoverDF['alpha'].iloc[0]) & (paramAllAlgs['tol'] == crossoverDF['tol'].iloc[0]) & (paramAllAlgs['max_iter'] == crossoverDF['max_iter'].iloc[0]) & (paramAllAlgs['activation'] == crossoverDF['activation'].iloc[0]) & (paramAllAlgs['solver'] == crossoverDF['solver'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = MLPClassifier(random_state=RANDOM_SEED) + params = {'hidden_layer_sizes': [crossoverDF['hidden_layer_sizes'].iloc[0]], 'alpha': [crossoverDF['alpha'].iloc[0]], 'tol': [crossoverDF['tol'].iloc[0]], 'max_iter': [crossoverDF['max_iter'].iloc[0]], 'activation': [crossoverDF['activation'].iloc[0]], 'solver': [crossoverDF['solver'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countMLP + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'MLP_M', AlgorithmsIDsEnd) + countMLP += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[8] + + for loop in range(setMaxLoopValue[8] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrMLPM.append(localCrossMutr[0]) + allParametersPerfCrossMutrMLPM.append(localCrossMutr[1]) + allParametersPerfCrossMutrMLPM.append(localCrossMutr[2]) + allParametersPerfCrossMutrMLPM.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrMLPM + + localCrossMutr.clear() + allParametersPerfCrossMutrRFC = [] + + while countRF < setMaxLoopValue[13]: + for dr in RFIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + RFIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*3)) + else: + RFIntIndex.append(int(re.findall('\d+', dr)[0])) + RFPickPair = random.sample(RFIntIndex,2) + + pairDF = paramAllAlgs.iloc[RFPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + randomZeroOne = random.randint(0, 1) + valuePerColumn = pairDF[column].iloc[randomZeroOne] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['n_estimators'] == crossoverDF['n_estimators'].iloc[0]) & (paramAllAlgs['criterion'] == crossoverDF['criterion'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = RandomForestClassifier(random_state=RANDOM_SEED) + params = {'n_estimators': [crossoverDF['n_estimators'].iloc[0]], 'criterion': [crossoverDF['criterion'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countRF + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'RF_C', AlgorithmsIDsEnd) + countRF += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[13] + + for loop in range(setMaxLoopValue[13] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrRFC.append(localCrossMutr[0]) + allParametersPerfCrossMutrRFC.append(localCrossMutr[1]) + allParametersPerfCrossMutrRFC.append(localCrossMutr[2]) + allParametersPerfCrossMutrRFC.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrRFC + + countRF = 0 + RFIntIndex = [] + localCrossMutr.clear() + allParametersPerfCrossMutrRFM = [] + + while countRF < setMaxLoopValue[7]: + if (int(re.findall('\d+', dr)[0]) >= greater): + RFIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*3)) + else: + RFIntIndex.append(int(re.findall('\d+', dr)[0])) + RFPickPair = random.sample(RFIntIndex,1) + + pairDF = paramAllAlgs.iloc[RFPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + if (column == 'n_estimators'): + randomNumber = random.randint(100, 200) + listData.append(randomNumber) + crossoverDF[column] = listData + else: + valuePerColumn = pairDF[column].iloc[0] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['n_estimators'] == crossoverDF['n_estimators'].iloc[0]) & (paramAllAlgs['criterion'] == crossoverDF['criterion'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = RandomForestClassifier(random_state=RANDOM_SEED) + params = {'n_estimators': [crossoverDF['n_estimators'].iloc[0]], 'criterion': [crossoverDF['criterion'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countRF + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'RF_M', AlgorithmsIDsEnd) + countRF += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[7] + + for loop in range(setMaxLoopValue[7] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrRFM.append(localCrossMutr[0]) + allParametersPerfCrossMutrRFM.append(localCrossMutr[1]) + allParametersPerfCrossMutrRFM.append(localCrossMutr[2]) + allParametersPerfCrossMutrRFM.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrRFM + + localCrossMutr.clear() + allParametersPerfCrossMutrGradBC = [] + + while countGradB < setMaxLoopValue[12]: + for dr in GradBIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + GradBIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*4)) + else: + GradBIntIndex.append(int(re.findall('\d+', dr)[0])) + GradBPickPair = random.sample(GradBIntIndex,2) + + pairDF = paramAllAlgs.iloc[GradBPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + randomZeroOne = random.randint(0, 1) + valuePerColumn = pairDF[column].iloc[randomZeroOne] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['n_estimators'] == crossoverDF['n_estimators'].iloc[0]) & (paramAllAlgs['learning_rate'] == crossoverDF['learning_rate'].iloc[0]) & (paramAllAlgs['criterion'] == crossoverDF['criterion'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = GradientBoostingClassifier(random_state=RANDOM_SEED) + params = {'n_estimators': [crossoverDF['n_estimators'].iloc[0]], 'learning_rate': [crossoverDF['learning_rate'].iloc[0]], 'criterion': [crossoverDF['criterion'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countGradB + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'GradB_C', AlgorithmsIDsEnd) + countGradB += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[12] + + for loop in range(setMaxLoopValue[12] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrGradBC.append(localCrossMutr[0]) + allParametersPerfCrossMutrGradBC.append(localCrossMutr[1]) + allParametersPerfCrossMutrGradBC.append(localCrossMutr[2]) + allParametersPerfCrossMutrGradBC.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrGradBC + + countGradB = 0 + GradBIntIndex = [] + localCrossMutr.clear() + allParametersPerfCrossMutrGradBM = [] + + while countGradB < setMaxLoopValue[6]: + for dr in GradBIDs: + if (int(re.findall('\d+', dr)[0]) >= greater): + GradBIntIndex.append(int(re.findall('\d+', dr)[0])-(addKNN-randomSearchVar*4)) + else: + GradBIntIndex.append(int(re.findall('\d+', dr)[0])) + GradPickPair = random.sample(GradBIntIndex,1) + + pairDF = paramAllAlgs.iloc[GradBPickPair] + crossoverDF = pd.DataFrame() + for column in pairDF: + listData = [] + if (column == 'n_estimators'): + randomNumber = random.randint(100, 200) + listData.append(randomNumber) + crossoverDF[column] = listData + else: + valuePerColumn = pairDF[column].iloc[0] + listData.append(valuePerColumn) + crossoverDF[column] = listData + if (((paramAllAlgs['n_estimators'] == crossoverDF['n_estimators'].iloc[0]) & (paramAllAlgs['learning_rate'] == crossoverDF['learning_rate'].iloc[0]) & (paramAllAlgs['criterion'] == crossoverDF['criterion'].iloc[0])).any()): + crossoverDF = pd.DataFrame() + else: + clf = GradientBoostingClassifier(random_state=RANDOM_SEED) + params = {'n_estimators': [crossoverDF['n_estimators'].iloc[0]], 'learning_rate': [crossoverDF['learning_rate'].iloc[0]], 'criterion': [crossoverDF['criterion'].iloc[0]]} + AlgorithmsIDsEnd = countAllModels + countGradB + localCrossMutr = crossoverMutation(XData, yData, clf, params, 'GradB_M', AlgorithmsIDsEnd) + countGradB += 1 + crossoverDF = pd.DataFrame() + + countAllModels = countAllModels + setMaxLoopValue[6] + + for loop in range(setMaxLoopValue[6] - 1): + localCrossMutr[0] = localCrossMutr[0] + localCrossMutr[(loop+1)*4] + localCrossMutr[1] = pd.concat([localCrossMutr[1], localCrossMutr[(loop+1)*4+1]], ignore_index=True) + localCrossMutr[2] = pd.concat([localCrossMutr[2], localCrossMutr[(loop+1)*4+2]], ignore_index=True) + localCrossMutr[3] = pd.concat([localCrossMutr[3], localCrossMutr[(loop+1)*4+3]], ignore_index=True) + + allParametersPerfCrossMutrGradBM.append(localCrossMutr[0]) + allParametersPerfCrossMutrGradBM.append(localCrossMutr[1]) + allParametersPerfCrossMutrGradBM.append(localCrossMutr[2]) + allParametersPerfCrossMutrGradBM.append(localCrossMutr[3]) + + HistoryPreservation = HistoryPreservation + allParametersPerfCrossMutrGradBM + + localCrossMutr.clear() + + allParametersPerfCrossMutr = allParametersPerfCrossMutrKNNC + allParametersPerfCrossMutrKNNM + allParametersPerfCrossMutrLRC + allParametersPerfCrossMutrLRM + allParametersPerfCrossMutrMLPC + allParametersPerfCrossMutrMLPM + allParametersPerfCrossMutrRFC + allParametersPerfCrossMutrRFM + allParametersPerfCrossMutrGradBC + allParametersPerfCrossMutrGradBM + allParametersPerformancePerModel[0] = allParametersPerformancePerModel[0] + allParametersPerfCrossMutrKNNC[0] + allParametersPerfCrossMutrKNNM[0] + + allParametersPerformancePerModel[1] = pd.concat([allParametersPerformancePerModel[1], allParametersPerfCrossMutrKNNC[1]], ignore_index=True) + allParametersPerformancePerModel[1] = pd.concat([allParametersPerformancePerModel[1], allParametersPerfCrossMutrKNNM[1]], ignore_index=True) + allParametersPerformancePerModel[2] = pd.concat([allParametersPerformancePerModel[2], allParametersPerfCrossMutrKNNC[2]], ignore_index=True) + allParametersPerformancePerModel[2] = pd.concat([allParametersPerformancePerModel[2], allParametersPerfCrossMutrKNNM[2]], ignore_index=True) + + allParametersPerformancePerModel[3] = pd.concat([allParametersPerformancePerModel[3], allParametersPerfCrossMutrKNNC[3]], ignore_index=True) + allParametersPerformancePerModel[3] = pd.concat([allParametersPerformancePerModel[3], allParametersPerfCrossMutrKNNM[3]], ignore_index=True) + + + allParametersPerformancePerModel[4] = allParametersPerformancePerModel[4] + allParametersPerfCrossMutrLRC[0] + allParametersPerfCrossMutrLRM[0] + + allParametersPerformancePerModel[5] = pd.concat([allParametersPerformancePerModel[5], allParametersPerfCrossMutrLRC[1]], ignore_index=True) + allParametersPerformancePerModel[5] = pd.concat([allParametersPerformancePerModel[5], allParametersPerfCrossMutrLRM[1]], ignore_index=True) + allParametersPerformancePerModel[6] = pd.concat([allParametersPerformancePerModel[6], allParametersPerfCrossMutrLRC[2]], ignore_index=True) + allParametersPerformancePerModel[6] = pd.concat([allParametersPerformancePerModel[6], allParametersPerfCrossMutrLRM[2]], ignore_index=True) + + allParametersPerformancePerModel[7] = pd.concat([allParametersPerformancePerModel[7], allParametersPerfCrossMutrLRC[3]], ignore_index=True) + allParametersPerformancePerModel[7] = pd.concat([allParametersPerformancePerModel[7], allParametersPerfCrossMutrLRM[3]], ignore_index=True) + + allParametersPerformancePerModel[8] = allParametersPerformancePerModel[8] + allParametersPerfCrossMutrMLPC[0] + allParametersPerfCrossMutrMLPM[0] + + allParametersPerformancePerModel[9] = pd.concat([allParametersPerformancePerModel[9], allParametersPerfCrossMutrMLPC[1]], ignore_index=True) + allParametersPerformancePerModel[9] = pd.concat([allParametersPerformancePerModel[9], allParametersPerfCrossMutrMLPM[1]], ignore_index=True) + allParametersPerformancePerModel[10] = pd.concat([allParametersPerformancePerModel[10], allParametersPerfCrossMutrMLPC[2]], ignore_index=True) + allParametersPerformancePerModel[10] = pd.concat([allParametersPerformancePerModel[10], allParametersPerfCrossMutrMLPM[2]], ignore_index=True) + + allParametersPerformancePerModel[11] = pd.concat([allParametersPerformancePerModel[11], allParametersPerfCrossMutrMLPC[3]], ignore_index=True) + allParametersPerformancePerModel[11] = pd.concat([allParametersPerformancePerModel[11], allParametersPerfCrossMutrMLPM[3]], ignore_index=True) + + allParametersPerformancePerModel[12] = allParametersPerformancePerModel[12] + allParametersPerfCrossMutrRFC[0] + allParametersPerfCrossMutrRFM[0] + + allParametersPerformancePerModel[13] = pd.concat([allParametersPerformancePerModel[13], allParametersPerfCrossMutrRFC[1]], ignore_index=True) + allParametersPerformancePerModel[13] = pd.concat([allParametersPerformancePerModel[13], allParametersPerfCrossMutrRFM[1]], ignore_index=True) + allParametersPerformancePerModel[14] = pd.concat([allParametersPerformancePerModel[14], allParametersPerfCrossMutrRFC[2]], ignore_index=True) + allParametersPerformancePerModel[14] = pd.concat([allParametersPerformancePerModel[14], allParametersPerfCrossMutrRFM[2]], ignore_index=True) + + allParametersPerformancePerModel[15] = pd.concat([allParametersPerformancePerModel[15], allParametersPerfCrossMutrRFC[3]], ignore_index=True) + allParametersPerformancePerModel[15] = pd.concat([allParametersPerformancePerModel[15], allParametersPerfCrossMutrRFM[3]], ignore_index=True) + + allParametersPerformancePerModel[16] = allParametersPerformancePerModel[16] + allParametersPerfCrossMutrGradBC[0] + allParametersPerfCrossMutrGradBM[0] + + allParametersPerformancePerModel[17] = pd.concat([allParametersPerformancePerModel[17], allParametersPerfCrossMutrGradBC[1]], ignore_index=True) + allParametersPerformancePerModel[17] = pd.concat([allParametersPerformancePerModel[17], allParametersPerfCrossMutrGradBM[1]], ignore_index=True) + allParametersPerformancePerModel[18] = pd.concat([allParametersPerformancePerModel[18], allParametersPerfCrossMutrGradBC[2]], ignore_index=True) + allParametersPerformancePerModel[18] = pd.concat([allParametersPerformancePerModel[18], allParametersPerfCrossMutrGradBM[2]], ignore_index=True) + + allParametersPerformancePerModel[19] = pd.concat([allParametersPerformancePerModel[19], allParametersPerfCrossMutrGradBC[3]], ignore_index=True) + allParametersPerformancePerModel[19] = pd.concat([allParametersPerformancePerModel[19], allParametersPerfCrossMutrGradBM[3]], ignore_index=True) + + addKNN = addGradB + + addLR = addKNN + setMaxLoopValue[16] + setMaxLoopValue[10] + + addMLP = addLR + setMaxLoopValue[15] + setMaxLoopValue[9] + + addRF = addMLP + setMaxLoopValue[14] + setMaxLoopValue[8] + + addGradB = addRF + setMaxLoopValue[13] + setMaxLoopValue[7] + + return 'Everything Okay' diff --git a/cachedir/joblib/run/crossoverMutation/0006053317cedfd0cc46f437f1de185e/metadata.json b/cachedir/joblib/run/crossoverMutation/0006053317cedfd0cc46f437f1de185e/metadata.json new file mode 100644 index 0000000..e5ca7cf --- /dev/null +++ b/cachedir/joblib/run/crossoverMutation/0006053317cedfd0cc46f437f1de185e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5000419616699219, "input_args": {"XData": " Fbs Slope Trestbps Exang Thalach Age Chol Sex Oldpeak Restecg Cp Ca Thal\n0 1 0 145 0 150 63 233 1 2.3 0 3 0 1\n1 0 0 130 0 187 37 250 1 3.5 1 2 0 2\n2 0 2 130 0 172 41 204 0 1.4 0 1 0 2\n3 0 2 120 0 178 56 236 1 0.8 1 1 0 2\n4 0 2 120 1 163 57 354 0 0.6 1 0 0 2\n.. ... ... ... ... ... ... ... ... ... ... .. .. ...\n298 0 1 140 1 123 57 241 0 0.2 1 0 0 3\n299 0 1 110 0 132 45 264 1 1.2 1 3 0 3\n300 1 1 144 0 141 68 193 1 3.4 1 0 2 3\n301 0 1 130 1 115 57 131 1 1.2 1 0 1 3\n302 0 1 130 0 174 57 236 0 0.0 0 1 1 2\n\n[303 rows x 13 columns]", "yData": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]", "clf": "LogisticRegression(C=722, max_iter=50, penalty='none', random_state=42,\n solver='saga')", "params": "{'C': [722], 'max_iter': [50], 'solver': ['saga'], 'penalty': ['none']}", "eachAlgor": "'LR'", "AlgorithmsIDsEnd": "663"}} \ No newline at end of file diff --git a/cachedir/joblib/run/crossoverMutation/0134461279de67c5743b613417b5d056/metadata.json b/cachedir/joblib/run/crossoverMutation/0134461279de67c5743b613417b5d056/metadata.json new file mode 100644 index 0000000..ee854d6 --- /dev/null +++ b/cachedir/joblib/run/crossoverMutation/0134461279de67c5743b613417b5d056/metadata.json @@ -0,0 +1 @@ +{"duration": 0.31346797943115234, "input_args": {"XData": " Fbs Slope Trestbps Exang Thalach Age Chol Sex Oldpeak Restecg Cp Ca Thal\n0 1 0 145 0 150 63 233 1 2.3 0 3 0 1\n1 0 0 130 0 187 37 250 1 3.5 1 2 0 2\n2 0 2 130 0 172 41 204 0 1.4 0 1 0 2\n3 0 2 120 0 178 56 236 1 0.8 1 1 0 2\n4 0 2 120 1 163 57 354 0 0.6 1 0 0 2\n.. ... ... ... ... ... ... ... ... ... ... .. .. ...\n298 0 1 140 1 123 57 241 0 0.2 1 0 0 3\n299 0 1 110 0 132 45 264 1 1.2 1 3 0 3\n300 1 1 144 0 141 68 193 1 3.4 1 0 2 3\n301 0 1 130 1 115 57 131 1 1.2 1 0 1 3\n302 0 1 130 0 174 57 236 0 0.0 0 1 1 2\n\n[303 rows x 13 columns]", "yData": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 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b/cachedir/joblib/run/crossoverMutation/func_code.py @@ -0,0 +1,91 @@ +# first line: 1887 +@memory.cache +def crossoverMutation(XData, yData, clf, params, eachAlgor, AlgorithmsIDsEnd): + print(clf) + search = GridSearchCV( + estimator=clf, param_grid=params, cv=crossValidation, refit='accuracy', + scoring=scoring, verbose=0, n_jobs=-1) + + # fit and extract the probabilities + search.fit(XData, yData) + + # process the results + cv_results = [] + cv_results.append(search.cv_results_) + df_cv_results = pd.DataFrame.from_dict(cv_results) + + # number of models stored + number_of_models = len(df_cv_results.iloc[0][0]) + + # initialize results per row + df_cv_results_per_row = [] + + # loop through number of models + modelsIDs = [] + for i in range(number_of_models): + number = AlgorithmsIDsEnd+i + modelsIDs.append(eachAlgor+str(number)) + # initialize results per item + df_cv_results_per_item = [] + for column in df_cv_results.iloc[0]: + df_cv_results_per_item.append(column[i]) + df_cv_results_per_row.append(df_cv_results_per_item) + + # store the results into a pandas dataframe + df_cv_results_classifiers = pd.DataFrame(data = df_cv_results_per_row, columns= df_cv_results.columns) + + # copy and filter in order to get only the metrics + metrics = df_cv_results_classifiers.copy() + metrics = metrics.filter(['mean_test_accuracy','mean_test_precision_macro','mean_test_recall_macro','mean_test_f1_macro','mean_test_roc_auc_ovo']) + + # concat parameters and performance + parametersPerformancePerModel = pd.DataFrame(df_cv_results_classifiers['params']) + parametersLocal = parametersPerformancePerModel['params'].copy() + + Models = [] + for index, items in enumerate(parametersLocal): + Models.append(index) + + parametersLocalNew = [ parametersLocal[your_key] for your_key in Models ] + + perModelProb = [] + + resultsWeighted = [] + resultsCorrCoef = [] + resultsLogLoss = [] + resultsLogLossFinal = [] + + # influence calculation for all the instances + inputs = range(len(XData)) + num_cores = multiprocessing.cpu_count() + + for eachModelParameters in parametersLocalNew: + clf.set_params(**eachModelParameters) + clf.fit(XData, yData) + yPredict = clf.predict(XData) + yPredict = np.nan_to_num(yPredict) + yPredictProb = cross_val_predict(clf, XData, yData, cv=crossValidation, method='predict_proba') + yPredictProb = np.nan_to_num(yPredictProb) + perModelProb.append(yPredictProb.tolist()) + + resultsWeighted.append(geometric_mean_score(yData, yPredict, average='macro')) + resultsCorrCoef.append(matthews_corrcoef(yData, yPredict)) + resultsLogLoss.append(log_loss(yData, yPredictProb, normalize=True)) + + maxLog = max(resultsLogLoss) + minLog = min(resultsLogLoss) + for each in resultsLogLoss: + resultsLogLossFinal.append((each-minLog)/(maxLog-minLog)) + + metrics.insert(5,'geometric_mean_score_macro',resultsWeighted) + metrics.insert(6,'matthews_corrcoef',resultsCorrCoef) + metrics.insert(7,'log_loss',resultsLogLossFinal) + + perModelProbPandas = pd.DataFrame(perModelProb) + + results.append(modelsIDs) + results.append(parametersPerformancePerModel) + results.append(metrics) + results.append(perModelProbPandas) + + return results diff --git a/cachedir/joblib/run/randomSearch/0233c44eb4aa993eee9e8a7676132392/metadata.json b/cachedir/joblib/run/randomSearch/0233c44eb4aa993eee9e8a7676132392/metadata.json new file mode 100644 index 0000000..ad69f73 --- /dev/null +++ b/cachedir/joblib/run/randomSearch/0233c44eb4aa993eee9e8a7676132392/metadata.json @@ -0,0 +1 @@ +{"duration": 15.748210191726685, "input_args": {"XData": " petal_w sepal_w sepal_l petal_l\n0 2.5 3.3 6.3 6.0\n1 1.9 2.7 5.8 5.1\n2 2.1 3.0 7.1 5.9\n3 1.8 2.9 6.3 5.6\n4 2.2 3.0 6.5 5.8\n.. ... ... ... ...\n145 0.3 3.0 4.8 1.4\n146 0.2 3.8 5.1 1.6\n147 0.2 3.2 4.6 1.4\n148 0.2 3.7 5.3 1.5\n149 0.2 3.3 5.0 1.4\n\n[150 rows x 4 columns]", "yData": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2]", "clf": "LogisticRegression(C=12, max_iter=200, penalty='none', random_state=42,\n solver='newton-cg')", "params": "{'C': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99], 'max_iter': [50, 100, 150, 200, 250, 300, 350, 400, 450], 'solver': ['lbfgs', 'newton-cg', 'sag', 'saga'], 'penalty': ['l2', 'none']}", "eachAlgor": "'LR'", "AlgorithmsIDsEnd": "100", "crossValidation": "5", "randomSear": "100"}} \ No newline at end of file diff --git a/cachedir/joblib/run/randomSearch/023f3d699445152f415b347092e29daf/output.pkl b/cachedir/joblib/run/randomSearch/023f3d699445152f415b347092e29daf/output.pkl new file mode 100644 index 0000000..845a453 Binary files /dev/null and b/cachedir/joblib/run/randomSearch/023f3d699445152f415b347092e29daf/output.pkl differ diff --git a/cachedir/joblib/run/randomSearch/02d0fcb09c77877347f9a2d49bb3df9d/metadata.json b/cachedir/joblib/run/randomSearch/02d0fcb09c77877347f9a2d49bb3df9d/metadata.json new file mode 100644 index 0000000..8bcda2b --- /dev/null +++ b/cachedir/joblib/run/randomSearch/02d0fcb09c77877347f9a2d49bb3df9d/metadata.json @@ -0,0 +1 @@ +{"duration": 56.42441511154175, "input_args": {"XData": " petal_w sepal_w sepal_l petal_l\n0 2.5 3.3 6.3 6.0\n1 1.9 2.7 5.8 5.1\n2 2.1 3.0 7.1 5.9\n3 1.8 2.9 6.3 5.6\n4 2.2 3.0 6.5 5.8\n.. ... ... ... ...\n145 0.3 3.0 4.8 1.4\n146 0.2 3.8 5.1 1.6\n147 0.2 3.2 4.6 1.4\n148 0.2 3.7 5.3 1.5\n149 0.2 3.3 5.0 1.4\n\n[150 rows x 4 columns]", "yData": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2]", "clf": "RandomForestClassifier(max_depth=6, n_estimators=35, random_state=42)", "params": "{'n_estimators': [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99], 'max_depth': [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19], 'criterion': ['gini', 'entropy']}", "eachAlgor": "'RF'", "AlgorithmsIDsEnd": "300", "crossValidation": "5", "randomSear": "100"}} \ No newline at end of file diff --git a/cachedir/joblib/run/randomSearch/08332aff2a49ee38cccf65e4b6719bef/output.pkl b/cachedir/joblib/run/randomSearch/08332aff2a49ee38cccf65e4b6719bef/output.pkl new file mode 100644 index 0000000..cdf63ad Binary files /dev/null and b/cachedir/joblib/run/randomSearch/08332aff2a49ee38cccf65e4b6719bef/output.pkl differ diff --git a/cachedir/joblib/run/randomSearch/14c6fb6b0e094cba60df823ddd4aa7ba/metadata.json b/cachedir/joblib/run/randomSearch/14c6fb6b0e094cba60df823ddd4aa7ba/metadata.json new file mode 100644 index 0000000..d362ca7 --- /dev/null +++ b/cachedir/joblib/run/randomSearch/14c6fb6b0e094cba60df823ddd4aa7ba/metadata.json @@ -0,0 +1 @@ +{"duration": 44.04567885398865, "input_args": {"XData": " petal_w sepal_w sepal_l petal_l\n0 2.5 3.3 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"100", "crossValidation": "5", "randomSear": "100"}} \ No newline at end of file diff --git a/cachedir/joblib/run/randomSearch/f4255a240cb404303d000d26c5a47e2d/output.pkl b/cachedir/joblib/run/randomSearch/f4255a240cb404303d000d26c5a47e2d/output.pkl new file mode 100644 index 0000000..78178c7 Binary files /dev/null and b/cachedir/joblib/run/randomSearch/f4255a240cb404303d000d26c5a47e2d/output.pkl differ diff --git a/cachedir/joblib/run/randomSearch/func_code.py b/cachedir/joblib/run/randomSearch/func_code.py new file mode 100644 index 0000000..b07bb3e --- /dev/null +++ b/cachedir/joblib/run/randomSearch/func_code.py @@ -0,0 +1,91 @@ +# first line: 741 +@memory.cache +def randomSearch(XData, yData, clf, params, eachAlgor, AlgorithmsIDsEnd,crossValidation,randomSear): + print('inside') + print(clf) + search = RandomizedSearchCV( + estimator=clf, param_distributions=params, n_iter=randomSear, + cv=crossValidation, refit='accuracy', scoring=scoring, + verbose=0, n_jobs=-1) + + # fit and extract the probabilities + search.fit(XData, yData) + + # process the results + cv_results = [] + cv_results.append(search.cv_results_) + df_cv_results = pd.DataFrame.from_dict(cv_results) + + # number of models stored + number_of_models = len(df_cv_results.iloc[0][0]) + + # initialize results per row + df_cv_results_per_row = [] + + # loop through number of models + modelsIDs = [] + for i in range(number_of_models): + number = AlgorithmsIDsEnd+i + modelsIDs.append(eachAlgor+str(number)) + # initialize results per item + df_cv_results_per_item = [] + for column in df_cv_results.iloc[0]: + df_cv_results_per_item.append(column[i]) + df_cv_results_per_row.append(df_cv_results_per_item) + + # store the results into a pandas dataframe + df_cv_results_classifiers = pd.DataFrame(data = df_cv_results_per_row, columns= df_cv_results.columns) + + # copy and filter in order to get only the metrics + metrics = df_cv_results_classifiers.copy() + metrics = metrics.filter(['mean_test_accuracy','mean_test_precision_macro','mean_test_recall_macro','mean_test_f1_macro','mean_test_roc_auc_ovo']) + # concat parameters and performance + parametersPerformancePerModel = pd.DataFrame(df_cv_results_classifiers['params']) + parametersLocal = parametersPerformancePerModel['params'].copy() + + Models = [] + for index, items in enumerate(parametersLocal): + Models.append(index) + parametersLocalNew = [ parametersLocal[your_key] for your_key in Models ] + + perModelProb = [] + + resultsWeighted = [] + resultsCorrCoef = [] + resultsLogLoss = [] + resultsLogLossFinal = [] + + # influence calculation for all the instances + inputs = range(len(XData)) + num_cores = multiprocessing.cpu_count() + + for eachModelParameters in parametersLocalNew: + clf.set_params(**eachModelParameters) + clf.fit(XData, yData) + yPredict = clf.predict(XData) + yPredict = np.nan_to_num(yPredict) + yPredictProb = cross_val_predict(clf, XData, yData, cv=crossValidation, method='predict_proba') + yPredictProb = np.nan_to_num(yPredictProb) + perModelProb.append(yPredictProb.tolist()) + + resultsWeighted.append(geometric_mean_score(yData, yPredict, average='macro')) + resultsCorrCoef.append(matthews_corrcoef(yData, yPredict)) + resultsLogLoss.append(log_loss(yData, yPredictProb, normalize=True)) + + maxLog = max(resultsLogLoss) + minLog = min(resultsLogLoss) + for each in resultsLogLoss: + resultsLogLossFinal.append((each-minLog)/(maxLog-minLog)) + + metrics.insert(5,'geometric_mean_score_macro',resultsWeighted) + metrics.insert(6,'matthews_corrcoef',resultsCorrCoef) + metrics.insert(7,'log_loss',resultsLogLossFinal) + + perModelProbPandas = pd.DataFrame(perModelProb) + + results.append(modelsIDs) + results.append(parametersPerformancePerModel) + results.append(metrics) + results.append(perModelProbPandas) + + return results